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Aquapôle INRA

Inra Bordeaux-Aquitaine
Quartier Ibarron
64310 Saint-Pée-sur-Nivelle

tél : +33 (0) 5 59 51 59 51
fax : +33 (0) 5 59 54 51 52


Publications de l'UMR Ecobiop 2009-2013

2013 - 2012 - 2011 - 2010 - 2009


  • Castège, I.; Soulier, L.; Hemery, G.; Mouches, C.; Lalanne, Y.; Dewez, A.; Pautrizel, F.; d'Elbée, J.; d'Amico, F. 2013. Cetacean standing pattern is better explained by variation in abundance at sea rather than by fishing activity : lessons from two decades survey in the Bay of Biscay (East-Atlantic, France). Journal of Marine Systems ,109-110 (supplt) : S 284 - S 292
  • Dauphin, G.J.R.; Brugel, C.; Hoffmann-Legrand, M.; Prévost, E. 2013. Estimating spatial distribution of Atlantic salmon escapement using redd counts despite changes over time in counting procedure : application to the Allier river population. Ecology of Freshwater Fish, 22(4) :  626-636
  • Dodson, J.J.; Sirois, P.; Daigle, G.; Gaudin, P.; Bardonnet, A. 2013. Otolith microstructure during the early life-history stages of brown trout : validation and interpretation. North American Journal of Fisheries Management, 33 (1) : 108-116
  • Gaither, M.R.; Aeby, G.; Vignon, M.; Meguro, Y.; Rigby, M.; Runyon, C.; Toonen, R.J.; Wood, C.L.; Bowen, B.W. 2013. An invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelago. PLOS One, 8 (2) : e56940
  • Geffroy, B.; Guiguen, Y.; Fostier, A.; Bardonnet, A. 2013. New insights regarding gonad development in European eel : evidence for a direct ovarian differentiation. Fish Physiology and Biochemistry, 39 (5) : 1129-1140
  • Labonne, J.; Vignon, M.; Prévost, E.; Lecomte, F.; Dodson, J.J.; Kaeuffer, R.; Aymes, J.C.; Jarry, M.; Gaudin, P.; Davaine, P.; Beall, E. 2013. Invasion dynamics of a fish-free landscape by brown trout (Salmo trutta). PLOS One, 8 (8) : e 71052
  • Lecomte, F.; Beall, E.; Chat, J.; Davaine, P.; Gaudin, P. 2013. The complete history of salmonid introductions in the Kerguelen Islands, Southern Ocean. Polar Biology, 36 (4) : 457-475
  • Lepais, O.; Muller, S.D.; Ben Saad Limam, S.; Benslama, M.; Rhazi, L.; Belouahem-Abed, D.; Daoud-Bouattour, A.; Gammar, A.M.; Ghrabi-Gammar, Z.; Bacles, C.F.E. 2013. High genetic diversity and distinctiveness of rear-edge climate relicts maintained by ancient tetraploidisation for Alnus glutinosa. Plos One, 8 (9) : e75029
  • Lepais, O.; Roussel, G.; Hubert, F.; Kremer, A.; Gerber, S. 2013. Strength and variability of posmating reproductive isolating barriers between four European white oak species. Tree Genetics and Genomes, 9 (3) : 841-853
  • Magda, D.; Gleizes, B.; Jarry, M. 2013. Maternal effect on seed survival and emergence in Cytisus scoparius : an experimental approach. Ecological Research, 28 (6) : 927-934
  • Martin, J.; Bareille, G.; Berail, S.; Mécheyran, C.; Gueraud, F.; Lange, F.; Daverat, F.; Bru, N.; Beall, E.; Barracou, D.; Donard, O. 2013. Persistence of a southern Atlantic salmon population : diversity of natal origins from otolith elemental and Sr isotopic signatures. Canadian Journal of Fisheries and Aquatic Sciences, 70(2) :182-197
  • Navarro, P.; Clemens, S.; Perrot, V.; Bolliet, V.; Tabouret, H.; Guerin, T.; Monperrus, M.; Amouroux, D. 2013. Simultaneous determination of emrcury and butyltin species using a multiple species-specific isotope dilution methodology on the European, Anguilla anguilla glass eel and yellow eel. International Journal of Environmental Analytical Chemistry, 93 (2) :166-182
  • Piou, C.; Prévost, E. 2013. Contrasting effects of climate change in continental vs. oceanic environments on population persistence and microevolution of Atlantic salmon. Global Change Biology, 19 (3) : 711-723
  • Régnier, T.; Bolliet, V.; Gaudin, P.; Labonne, J. 2013. Bigger is not always better : egg size influences survival throughout incubation in brown trout (Salmo trutta). Ecology of Freshwater Fish, 22 (2) : 169-177
  • Teichert, N.; Keith, P.; Valade, P.; Richarson, M.; Metzger, M.; Gaudin, P. 2013. Breeding pattern and nest guarding in Sicyopterus lagocephalus, a widespread amphidromous Gobiidae. Journal of Ethology, 31 (3) :239-247
  • Teichert, N.; Valade, P.; Bosc, P.; Richarson, M.; Gaudin, P. 2013. Spawning-habitat selection of an Indo-Pacific amphidromous gobiid fish, Sicyopterus lagocephalus (Pallas). Marine and Freshwater Research, 64 (11), 1058-1067


  • Acolas, M.L.; Labonne, J.; Baglinière, J.L.; Roussel, J.M. The role of body size versus growth on the decision to migrate : a case study with Salmo trutta. Naturwissenschaften. 2012, 99 (1) : 11-21
  • Bried, J.T.; D'Amico, F.; Samways, M.J. A critique of the dragonfly delusion hypothesis : why sampling exuviae does not avoid bias. Insect Conservation and Diversity. 2012, 5 (5) :398-402
  • Buoro, M.; Gimenez, O.; Prévost, E. Assessing adaptive phenotypic plasticity by means of conditional strategies from empirical data : the latent environmental threshold model. Evolution. 2012, 66 (4) : 996-1009
  • Buoro, M.; Prévost, E.; Gimenez, O. 2012. Digging through model complexity : using hierarchical models to uncover evolutionnary processes in the wild. Journal of Evolutionary Biology. 25 (10) : 2077-2090
  • Caill-Milly, N.; Bru, N.; Mahé, K.; Borie, C.; D'Amico, F. 2012. Shell shape analysis and spatial allometry patterns of manila clam (Ruditapes phillipinarum) in a mesotidal coastal lagoon. Journal of Marine Biology.Article ID 281206
  • Chat, J.. Manicki, A. A SNP-based assay in a non model species : evolutionary lineage assignment of brown trout ancient DNA. Conservation Genetic Resources. 2012, 4 (1) : 59-62
  • Da Silveira Pontes, L.; Magda, D.; Jarry, M.; Gleizes, B.; Agreil, C. 2012. Shrub encroachment control by browsing : targeting the right demographic process. Acta Oecologica, 45 :25-30
  • Darvill, B.; Lepais, O.; Woodall, L.C.; Goulson, D. Triploid bumblebees indicate a direct cost of inbreeding in fragmented populations. Molecular Ecology. 2012, 21 (16) : 3988-3995
  • Geffroy, B.; Bardonnet, A. Differential effects of behaviour, propensity to migrate and recruitment season on glass eels and elvers'growing performance.Ecology of Freshwater Fish. 2012, 21 (3) 469-482
  • Geffroy, B.; Fostier, A.; Guiguen, Y.; Bardonnet, A. Unusual cases of adult intersexuality in the European eel Anguilla anguilla. Sexual Development. 2012, 6 (6) : 316-319
  • Piou, C.; Prévost, E. A demo-genetic individual-based model for Atlantic salmon populations : model structure, parameterization and sensitivity. Ecological Modelling. 2012, 231 : 37-52
  • Régnier, T.; Bolliet, V.; Gaudin, P.; Labonne, J. Female effects on offspring energetic status and consequences on early development in yolk feeding brown trout (Salmo trutta). Journal of Experimental Zoology. 2012, 317 A (6) : 347-358
  • Régnier, T.; Labonne, J.; Gaudin, P.; Bolliet, V. Influence of energetic status on ontogenetic niche shifts : emergence from the redd is linked to metabolic rate in brown trout. Oecologia. 2012, 168(2) : 371-380
  • Rotheray, E.L.; Lepais, O.; Nater, A.; Krûtzen, M.; Greminger, M.; Goulson, D.; Bussière, L.F. Genetic variation and population decline of an endangered hoverfly Blera fallax (Diptera : Syrphidae). Conservation Genetics. 2012, 13 (5) : 1283-1291
  • Schroder, S.L.; Knudsen, C.M.. Pearsons, T.N.; Kassler, T.W.; Beall, E.P.; Young, S.F.; Fast, D.E. Breeding success of four male life history types of spring Chinook salmon spawning in an artificial stream. Environmental Biology of Fishes. 2012, 94 (1) : 231-248.
  • Teichert, N.; Richarson, M.; Valade, P.; Gaudin, P. Reproduction and marine life history of an endemic amphidromous gobiid fish of Reunion Island. Aquatic Biology. 2012, 15(3) : 225-236
  • Vignon, M. Ontogenic trajectories of otolith shape during shift in habitat use : interaction between otolith growth and environment. Journal of Experimental Marine Biology and Ecology. 2012, 420-421 : 26-32
  • Viscosi, V.; Antonecchia, G.; Lepais, O.; Fortini, P.; Gerber, S.; Loy, S. 2012. Leaf shape and size differentiation in white oaks : assessment of allometric relationship among three sympatric species and their hybrids. International Journal of Plant Sciences. 173 (8) : 875-884
  • Williams-Tripp, M.; D'Amico, F.J.N.; Pagé, C.; Bertrand, A.; Némoz, M.; Brown, J.A. Modeling rare species distribution at the edge : the case for the vulnerable endemic pyrenean desman in France.The Scientific World Journal. 2012, Article ID 612965


  • Bal, G.; Rivot, E.; Prévost, E. Piou, C.; Baglinière, J.L. Effect of temperature and density of juvenile salmonids on growth of young-of-the-year Atlantic salmon Salmo salar. Journal of Fish Biology. 2011, 78 (4) :  1002-1022
  • Brun, M.; Abraham, C.; Jarry, M.; Dumas, J.; Lange, F.; Prévost, E. Estimating an homogeneous series of a population abundance indicator despite changes in data collection procedure : a hierarchical bayesian modelling approach. Ecological Modelling. 2011, 222(5) : 1069-1079
  • Bureau du Colombier, S.; Bolliet, V.; Lambert, P.; Bardonnet, A. Metabolic loss of mass in glass eels at different salinities according to their propensity to migrate. Estuarine, Coastal and Shelf Science. 2011, 93 (1) : 1-6
  • Charmantier, A.; Buoro, M.; Gimenez, O.; Weimerkirsch, H. Heritability of short-scale natal dispersal in a large-scale foraging bird, the wandering albatross. Journal of Evolutionary Biology. 2011, 24 (7) : 1487-1496
  • Delcourt, J.; Ylieff, M.; Bolliet, V. Video tracking in the extreme : a new possibility for tracking nocturnal underwater transparent animals with elastomer tags. Behavior Research Methods. 2011, 43 (2) : 590-600
  • Gaucherel, C.. Salomon, L.; Labonne, J. Variable self-similar sinuosity properties within simulated river networks.Earth Surface Processes and Landforms. 2011, 36 (10) : 1313-1320
  • Goni, N.; Logan, J.; Arrizabalaga, H.; Jarry, M.; Lutcavage, M. Variability of albacore (Thunnus alalunga) diet in the Northeast Atlantic and Mediterranean Sea. Marine Biology. 2011, 158 (5) : 1057-1073
  • Horreo, J.L.; Ayllon, F.. Perez, J.; Beall, E.; Garcia-Vasquez, E. Interspecific hybridization, a matter of pioneering ? Insights from Atlantic salmon and brown trout. Journal of Heredity. 2011, 102 (2) : 237-242
  • Horreo, J.L.; Martinez, J.L.; Ayllon, F.; Pola, I.G.; Monteoliva, J.A.; Héland, M.; Garcia-Vazquez, E. Impact of habitat fragmentation on the genetics of populations in dendritic landscapes. Freshwater Biology. 2011, 56 (12) : 2567-2579
  • Jaffal, A.; Givaudan, N.; Betoulle, S.; Terreau, A.; Paris-Palacios, S.; Biaganti-Risbourg, S.; Beall, E.; Roche, H. Polychlorinated biphenyls in freshwater salmonids from Kerguelen Islands in the Southern Ocean. Environmental Pollution. 2011, 159 (5) : 1381-1389
  • Jaffal, A.; Paris-Palacios, S.; Jolly, S.; Thailly, A.F.; Delahaut, L.; Beall, E.; Roche, H.; Biagianti-Risbourg, S.; Betoulle, S. Cadmium and copper contents in a freshwater fish species (brook trout, Salvelinus fontinalis) from the subantarctic Kerguelen Islands. Polar Biology. 2011, 34 (3) : 397-409
  • Tentelier, C.; Larrieu, M.; Aymes, J.C.; Labonne, J. Male antagonistic behaviour after spawning suggests paternal care in brown trout, Salmo trutta. Ecology of Freshwater Fish. 2011, 20 (4) : 580-587
  • Tentelier, C.; Piou, C. Obstacles to migration constrain nest distribution of Atlantic salmon. Ecology of Freshwater Fish. 2011, 20 (3) : 400-408
  • Vignon, M. Putting in shape - towards a unified approach for the taxonomic description of monogenean haptoral hard parts. Systematic Parasitology. 2011, 79 (3) : 161-174
  • Vignon, M. Inference in morphological taxonomy using collinear data and small sample sizes : Monogean sclerites (Platyhelminthes) as a case study. Zoologica Scripta. 2011, 40 (3) : 306-316
  • Vignon, M.; Dierking, J. Prey regurgitation and stomach vacuity among groupers and snappers. Environmental Biology of Fishes. 2011, 90 (4) : 361-366
  • Vignon, M.; Pariselle, A.; Vanhove, M.P.M. Modularity in attachment organs of African Cichlidogyrus (Platyhelminthes: Monogea: Ancyrocephalidae) reflects phylogeny rather than host specificity or geographic distribution. Biological Journal of the Linnean Society. 2011, 102 : 694-706


  • Aymes, J.C.; Larrieu, M.; Tentelier, C.; Labonne, J. Occurrence and variation of egg cannibalism in brown trout Salmo trutta. Naturwissenschaften. 2010, 97(4) : 435-439
  • Buoro, M.; Prévost, E.; Gimenez, O. Investigating evolutionary trade-offs in wild populations of Atlantic salmon (Salmo salar) : incorporating detection probabilities and individual heterogeneity. Evolution. 2010, 64 (9) : 2629-2642
  • Castillo, A.G.F.; Beall, E.; Moran, P.; Martinez, J.L.; Garcia-Vasquez, E. Indirect benefits for female salmon from mating with brown trout. Journal of Heredity. 2010, 101 (4) : 461-468
  • Dauphin, G.; Prévost, E.; Adams, C.E.; Boylan, P. Using redd counts to estimate salmonids spawner abundances : A Bayesian modelling approach. Fisheries Research. 2010, 106 (1) : 32-40
  • Dufour, F.; Arrizabalaga, H.; Irigoien, X.; Santiago, J. Climate impacts on albacore and bluefin tunas migrations phenology and spatial distribution. Progress in Oceanography. 2010, 86 (1-2) : 283-290
  • Folcher, L.; Delos, M.; Marengue, E.; Jarry, M.; Weissenberger, A.; Eychenne, N.; Regnault-Roger. Lower mycotoxin levels in Bt maize grain. Agronomy for Sustainable Development. 2010, 30 (4) : 711-719
  • Grimardias, D.; Merchermek, N.; Manicki, A.; Chebaux, J.; Gaudin, P.; Jarry, M.; Beall, E. Effects of habitat on individual reproductive success of mature male parr of Atlantic salmon Salmo salar. Journal of Fish Biology. 2010, 77 (10) : 2460-2466
  • Grimardias, D.; Merchermek, N.; Manicki, A.; Garnier, J.; Gaudin, P.; Jarry, M.; Beall, E. Reproductive success of Atlantic salmon (Salmo salar) mature male parr in a small river, the Nivelle : influence of shelters. Ecology of Freshwater Fish. 2010, 19 (4) : 510-519
  • Imbert, H.; Labonne, J.; Rigaud, C.; Lambert, P. Resident and migratory tactics in freshwater European eels are size-dependent. Freshwater Biology. 2010, 55 (7) : 1483-1493
  • Labonne, J.; Hendry, A.P. Natural and sexual selection giveth and taketh away reproductive barriers : models of population divergence in guppies. The American Naturalist. 2010, 176(1) : 26-39
  • Launey, S.; Brunet, G.; Guyomard, R.; Davaine, P. Role of introduction history and landscape in the range expansion of brown trout (Salmo trutta L.) in the Kerguelen islands. Journal of Heredity. 2010, 101(3) : 270-273
  • Régnier, T.; Bolliet, V.; Labonne, J.; Gaudin, P. Assessing maternal effects on metabolic rate dynamics along early development in brown trout (Salmo trutta) : an individual-based approach. Journal of Comparative Physiology B. 2010,180 (1) : 25-31
  • Schroder, S.L.; Knudsen, C.M.; Pearsons, T.N.; Kassler, T.W.; Young, S.F.; Beall, E.P.; Fast, D.E. Behavior and breeding success of wild and first-generation hatchery male spring chinook salmon spawning in an artificial stream. Transactions of the American Fisheries Society. 2010. 139 (4) : 989-1003
  • Valiente, A.G.; Beall, E.; Garcia-Vazquez, E. Population genetics of south European Atlantic salmon under global change. Global Change Biology. 2010, 16(1) : 36-47
  • Vignon, M.; Morat, F. Environmental and genetic determinant of otolith shape revealed by a non-indigenous tropical fish. Marine Ecology Progress Series. 2010, 411 : 231-241


  • Aymes, J.C., Rives, J. Detection efficiency of multiplexed Passive Integrated Transponder antennas is influenced by environmental conditions and fish swimming behaviour. Ecology of Freshwater Fish. 2009, 18 (4) : 507-513
  • Bureau Du Colombier, S. ; Bolliet, V. ; Bardonnet, A. Swimming activity and behaviour of European Anguilla anguilla glass eels in response to photoperiod and flow reversal and the role of energy status. Journal of Fish Biology. 2009, 74 (9) : 2002-2013
  • Dauphin, G. ; Prévost, E. ; Adams, C.E. ; Boylan, P. A Bayesian approach to estimating Atlantic salmon fry densities using a rapid sampling technique. Fisheries Management and Ecology. 2009, 16 (5) : 399-408
  • D'Elbée, J.; Castège, I.; Hémery, G.; Lalanne, Y.; Mouchès, C.; Pautrizel, F.; D'Amico, F. Variation and temporal patterns in the composition of the surface ichthyoplankton in the southern Bay of Biscay (W. Atlantic). Continental Shelf Research. 2009, 29 : 1136-1144
  • Folcher, L.; Jarry, M.; Weissenberger, A.; Gérault, F.; Eychenne, N.; Delos, M.; Regnault-Roger, C. Comparative activity of agrochemical treatments on mycotoxin levels with regard to corn borers and Fusarium mycoflora in amize (Zea mays L.) fields. Crop Protection. 2009, 28 : 302-308
  • Jarry, M. Modélisation et paradigmes disciplinaires. Albaladejo, C. ; Geslin, P. ; Magda, D. ; Salembier, P. La mise à l’épreuve. Le transfert des connaissances scientifiques en questions. Versailles (FRA) : Editions Quae ; Update Sciences et Technologies. 2009, : 87-103.
  • Labonne, J. ; Augery, M. ; Parade, M. ; Brinkert, S. ; Prévost, E. ; Héland, M. ; Beall, E. Female preference for male body size in brown trout, Salmo trutta : is big still fashionable ?. Animal Behaviour. 2009, 77 (1) : 129-137.
  • Magda, D. ; Chambon-Dubreuil, E. ; Agreil, C. ; Gleizes, B. ; Jarry, M. Demographic analysis of a dominant shrub (Cytisus scoparius) : prospects for encroachment control. Basic and Applied Ecology. 2009, 10 : 631-639
  • Piou, C. ; Berger, U. ; Grimm, V. Proposing an information criterion for individual-based models developed in a pattern-oriented modelling framework. Ecological Modelling. 2009, 220 (17) : 1957-1967.
  • Prévost, E.; Rivot, E. Aide à la décision pour la régulation de l'exploitation des populations naturelles de saumon atlantique (Salmo salar). In : de Turckheim, E.; Hubert, B. Messéan, A. Concevoir et construire la décision. Démarche en agriculture, agroalimentaire et espace rural. Versailles (FRA) : Editions Quae ; Update Sciences et Technologies. 2009, 241-262
  • Tentelier, C., Lacroix, M.N., Fauvergue, X. Inflexible wasps : the aphid parasitoid Lysiphlebus testaceipes does not track multiple changes in habitat profitability. Animal Behaviour. 2009, 44(1) : 95-100