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Unité Mixte de Recherche Inra-Univ. Bordeaux 1 "Biodiversité Gènes et Communautés" - Biogeco

Unité mixte de recherche (Inra, Univ. Bordeaux 1)Biodiversité, gènes et communautés (Biogeco) INRA_rvb150Bordeaux1

INRA Bordeaux-Aquitaine

Site de Recherches Forêt-Bois

69 route d'Arcachon

33612 CESTAS Cedex - FRANCE

2014

Publications 2014

Albertin W, Chasseriaud L, Comte G, Panfili A, Delcamp A, Salin F, Marullo P, Bely M (2014) Winemaking and bioprocesses strongly shaped the genetic diversity of the ubiquitous yeastTorulaspora delbrueckii. PloS one9, e94246.

Albertin W, Panfili A, Miot-Sertier C, Goulielmakis A, Delcamp A, Salin F, Lonvaud-Funel A, Curtin C, Masneuf-Pomarede I (2014) Development of microsatellite markers for the rapid and reliable genotyping of Brettanomyces bruxellensis at strain level. Food Microbiology 42, 188-195.

Al Hayek P, Touzard B, Le Bagousse-Pinguet Y, Michalet R (2014) Phenotypic differentiation within a foundation grass species correlates with species richness in a subalpine community. Oecologia176, 533-544.

Balducci L, Deslauriers A, Giovannelli A, Beaulieu M, Delzon S, Rossi S, Rathgeber CBK (2014) How do drought and warming influence survival and wood traits of Picea mariana saplings?Journal of Experimental Botany 66, 377-389.

Augusto L, Davies TJ, Delzon S, Schrijver A (2014) The enigma of the rise of angiosperms: can we untie the knot?Ecology Letters17, 1326–1338.

Barbaro L, Giffard B, Charbonnier Y, Halder I, Brockerhoff EG (2014) Bird functional diversity enhances insectivory at forest edges: a transcontinental experiment.Diversity and Distributions 20, 149–159.

Barnagaud J-Y, Barbaro L, Papaïx J, Deconchat M, Brockerhoff EG (2014) Habitat filtering by landscape and local forest composition in native and exotic New Zealand birds.Ecology95, 78–87.

Besnard G, Dupuy J, Larter M, Cuneo P, Cooke D, Chikhi L (2014) History of the invasive African olive tree in Australia and Hawaii: evidence for sequential bottlenecks and hybridization with the Mediterranean olive.Evolutionary Applications7, 195–211.

Bouche PS, Larter M, Domec J-C, Burlett R, Gasson P, Jansen S, Delzon S (2014) A broad survey of hydraulic and mechanical safety in the xylem of conifers. Journal of Experimental Botany65, 4419-4431.

Brousseau L, Tinaut A, Duret C, Lang T, Garnier-Géré P, Scotti I (2014) High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species. BMC Genomics15, 238.

Cabello-Conejo MI, Becerra-Castro C, Prieto-Fernández A, Monterroso C, Saavedra-Ferro A, Mench M, Kidd PS (2014) Rhizobacterial inoculants can improve nickel phytoextraction by the hyperaccumulator Alyssum pintodasilvae. Plant and Soil379, 35-50.

Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara M-A, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin J-F, Lelu-Walter M-A, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM (2014) De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology. Plant Biotechnology Journal12, 286-299.

Castagneyrol B, Jactel H, Charbonnier Y, Barbaro L, Dulaurent-Mercadal A-M (2014) Egg mortality in the pine processionary moth: habitat diversity, microclimate and predation effects. Agricultural and Forest Entomology 16, 284–292.

Castagneyrol B, Jactel H, Vacher C, Brockerhoff EG, Koricheva J (2014) Effects of plant phylogenetic diversity on herbivory depend on herbivore specialization.Journal of Applied Ecology 51, 134–141.

Castagneyrol B, Régolini M, Jactel H (2014) Tree species composition rather than diversity triggers associational resistance to the pine processionary moth. Basic and Applied Ecology15, 516–523.

Ceulemans T, Stevens CJ, Duchateau L, Jacquemyn H, Gowing DJG, Merckx R, Wallace H, Rooijen N, Goethem T, Bobbink R, Dorland E, Gaudnik C, Alard D, Corcket E, Muller S, Dise NB, Dupré C, Diekmann M, Honnay O (2014) Soil phosphorus constrains biodiversity across European grasslands. Global Change Biology 20, 3814-3822.

Chaboureau A-C, Sepulchre P, Donnadieu Y, Franc A (2014) Tectonic-driven climate change and the diversification of angiosperms. Proceedings of the National Academy of Sciences of the USA111, 14066-14070.

Charbonnier Y, Barbaro L, Theillout A, Jactel H (2014) Numerical and functional responses of forest bats to a major insect pest in pine plantations. PLOS ONE9, e109488.

Coince A, Cordier T, Lengellé J, Defossez E, Vacher C, Robin C, Buée M, Marçais B (2014) Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns. PLOS ONE9, e100668.

Dantec CF, Vitasse Y, Bonhomme M, Louvet J-M, Kremer A, Delzon S (2014) Chilling and heat requirements for leaf unfolding in European beech and sessile oak populations at the southern limit of their distribution range.International Journal of Biometeorology58, 1853-1864.

David G, Giffard B, Piou D, Jactel H (2014) Dispersal capacity of Monochamus galloprovincialis, the European vector of the pine wood nematode, on flight mills.Journal of Applied Entomology 138, 566–576.

D'Costa L, Simmonds MSJ, Straw N, Castagneyrol B, Koricheva J (2014) Leaf traits influencing oviposition preference and larval performance of Cameraria ohridella on native and novel host plants. Entomologia Experimentalis et Applicata 152, 157–164.

de Lafontaine G, Amasifuen Guerra CA, Ducousso A, Petit RJ (2014) Cryptic no more: soil macrofossils uncover Pleistocene forest microrefugia within a periglacial desert. New Phytologist204, 715-729.

de Lafontaine G, Amasifuen Guerra CA, Ducousso A, Sánchez-Goñi M-F, Petit RJ (2014) Beyond skepticism: uncovering cryptic refugia using multiple lines of evidence. New Phytologist204, 450-454.

Delerue F, Gonzalez M, Atlan A, Pellerin S, Augusto L (2014) Pre-dispersal seed predation of gorse (Ulex europaeus) along gradients of light and plant density. New Zealand Journal of Ecology38, 268-278.

Delzon S, Cochard H (2014) Recent advances in tree hydraulics highlight the ecological significance of the hydraulic safety margin. New Phytologist203, 355–358.

Desprez-Loustau M-L, Saint-Jean G, Barrès B, Dantec CF, Dutech C (2014) Oak powdery mildew changes growth patterns in its host tree: host tolerance response and potential manipulation of host physiology by the parasite. Annals of Forest Science71, 563-573.

Dickie IA, Bennett BM, Burrows LE, Nunez Nuñez MA, Peltzer DA, Porté A, Richardson DM, Rejmánek M, Rundel PW, van Wilgen BW (2014) Conflicting values: ecosystem services and invasive tree management.Biological Invasions16, 705-719.

Diekmann M, Jandt U, Alard D, Bleeker A, Corcket E, Gowing DJG, Stevens CJ, Dupré C (2014) Long-term changes in calcareous grassland vegetation in North-western Germany - No decline in species richness, but a shift in species composition. Biological Conservation172, 170-179.

Dute RR, Bowen LA, Schier S, Vevon AG, Best TL, Auad M, Elder T, Bouche P, Jansen S (2014) Pit membranes of Ephedra resemble gymnosperms more than angiosperms. IAWA Journal35, 217-235.

Endelman JB, Plomion C (2014) LPmerge: an R package for merging genetic maps by linear programming. Bioinformatics 30, 1623-1624.

El Mujtar VA, Gallo LA, Tiange L, Garnie-Géré P (2014) Development of genomic resources for Nothofagus species using next-generation sequencing data. Molecular Ecology Resources 14, 1281–1295.

Feau N, Dutech C, Brusini J, Rigling D, Robin C (2014) Multiple introductions and recombination in Cryphonectria hypovirus 1: perspective for a sustainable biological control of chestnut blight. Evolutionary Applications 7, 580–596.

Garcés M, Le Provost G, Lalanne C, Claverol S, Barré A, Plomion C, Herrera R (2014) Proteomic analysis during ontogenesis of secondary xylem in maritime pine. Tree Physiology 34, 1263-1277.

Gavin DG, Fitzpatrick MC, Gugger PF, Heath KD, Rodríguez-Sánchez F, Dobrowski SZ, Hampe A, Hu FS, Ashcroft MB, Bartlein PJ (2014) Climate refugia: joint inference from fossil records, species distribution models and phylogeography. New Phytologist204, 37–54.

Gerber S, Chadœuf J, Gugerli F, Lascoux M, Buiteveld J, Cottrell J, Dounavi A, Fineschi S, Forrest LL, Fogelqvist J, Goicoechea PG, Jensen JS, Salvini D, Vendramin GG, Kremer A (2014) High rates of gene flow by pollen and seed in oak populations across Europe.PLoS ONE9, e85130.

Gschloessl B, Vogel H, Burban C, Heckel D, Streiff R, Kerdelhué C (2014) Comparative analysis of two phenologically divergent populations of the pine processionary moth (Thaumetopoea pityocampa) by de novo transcriptome sequencing.Insect Biochemistry and Molecular Biology 46, 31–42.

Hajek P, Leuschner C, Hertel D, Delzon S, Schuldt B (2014) Trade-offs between xylem hydraulic properties, wood anatomy and yield in Populus.Tree Physiology34, 744-756.

Hattab N, Motelica-Heino M, Bourrat X, Mench M (2014) Mobility and phytoavailability of Cu, Cr, Zn, and As in a contaminated soil at a wood preservation site after 4 years of aided phytostabilization. Environmental Science and Pollution Research21, 10307-10319.

Hego E, Bes CM, Bedon F, Palagi PM, Chaumeil P, Barré A, Claverol S, Dupuy J-W, Bonneu M, Lalanne C (2014) Differential accumulation of soluble proteins in roots of metallicolous and non-metallicolous populations of Agrostis capillaris L. exposed to Cu. Proteomics14, 1746–1758.

Hubert F, Grimm GW, Jousselin E, Berry V, Franc A, Kremer A (2014) Multiple nuclear genes stabilize the phylogenetic backbone of the genus Quercus. Systematics and Biodiversity12, 405-423.

Jacquet J-S, Bosc A, O'Grady A, Jactel H (2014) Combined effects of defoliation and water stress on pine growth and non-structural carbohydrates. Tree Physiology 34, 367-376.

Kerdelhué C, Boivin T, Burban C (2014) Contrasted invasion processes imprint the genetic structure of an invasive scale insect across southern Europe. Heredity, 113, 390-400.

Kermarrec L, Franc A, Rimet F, Chaumeil P, Frigerio J-M, Humbert J-F, Bouchez A (2014) A next-generation sequencing approach to river biomonitoring using benthic diatoms. Freshwater Science33, 349-363.

Kolbas A, Marchand L, Herzig R, Nehnevajova E, Mench M (2014) Phenotypic seedling responses of a metal-tolerant mutant line of sunflower growing on a Cu-contaminated soil series: potential uses for biomonitoring of Cu exposure and phytoremediation.Plant and Soil376, 377-397.

Kremer A, Potts BM, Delzon S (2014) Genetic divergence in forest trees: understanding the consequences of climate change.Functional Ecology 28, 22–36.

Kumpiene J, Bert V, Dimitriou I, Eriksson J, Friesl-Hanl W, Galazka R, Herzig R, Janssen J, Kidd P, Mench M (2014) Selecting chemical and ecotoxicological test batteries for risk assessment of trace element-contaminated soils (phyto) managed by gentle remediation options (GRO). Science of The Total Environment496, 510-522.

Lagache L, Klein EK, Ducousso A, Petit RJ (2014) Distinct male reproductive strategies in two closely related oak species. Molecular Ecology 23, 4331–4343.

Lamy J-B, Delzon S, Bouche PS, Alia R, Vendramin GG, Cochard H, Plomion C (2014) Limited genetic variability and phenotypic plasticity detected for cavitation resistance in a Mediterranean pine.New Phytologist201, 874–886.

Le Bagousse-Pinguet L, Maalouf J-P, Touzard B, Michalet R (2014) Importance, but not intensity of plant interactions relates to species diversity under the interplay of stress and disturbance. Oikos 123, 777–785.

Leger J-B, Vacher C, Daudin J-J (2014) Detection of structurally homogeneous subsets in graphs.Statistics and Computing24, 675–692.

Lindner M, Fitzgerald JB, Zimmermann NE, Reyer C, Delzon S, van der Maaten E, Schelhaas M-J, Lasch P, Eggers J, van der Maaten-Theunissen M (2014) Climate change and European forests: What do we know, what are the uncertainties, and what are the implications for forest management?Journal of Environmental Management146, 69-83.

Mandrou E, Denis M, Plomion C, Salin F, Mortier F, Gion J-M (2014) Nucleotide diversity in lignification genes and QTNs for lignin quality in a multi-parental population ofEucalyptus urophylla. Tree Genetics & Genomes10, 1281–1290.

Marchand L, Nsanganwimana F, Oustrière N, Grebenshchykova Z, Lizama-Allende K, Mench M (2014) Copper removal from water using a bio-rack system either unplanted or planted with Phragmites australis, Juncus articulatus and Phalaris arundinacea.Ecological Engineering64, 291-300.

Marchand L, Nsanganwimana F, Cook BJ, Vystavna Y, Huneau F, Le Coustumer P, Lamy JB, Oustrière N, Mench M (2014) Trace element transfer from soil to leaves of macrophytes along the Jalle d'Eysines River, France and their potential use as contamination biomonitors. Ecological Indicators46, 425-437.

Marchand L, Nsanganwimana F, Lamy J-B, Quintela-Sabaris C, Gonnelli C, Colzi I, Fletcher T, Oustrière N, Kolbas A, Kidd P (2014) Root biomass production in populations of six rooted macrophytes in response to Cu exposure: Intra-specific variability versus constitutive-like tolerance. Environmental Pollution193, 205-215.

Marguerit E, Bouffier L, Chancerel E, Costa P, Lagane F, Guehl J-M, Plomion C, Brendel O (2014) The genetics of water-use efficiency and its relation to growth in maritime pine. Journal of Experimental Botany 65, 4757-4768.

Martin-StPaul NK, Longepierre D, Huc R, Delzon S, Burlett R, Joffre R, Rambal S, Cochard H (2014) How reliable are methods to assess xylem vulnerability to cavitation? The issue of 'open vessel' artifact in oaks. Tree Physiology 34, 894-905.

Mauriat M, Petterle A, Bellini C, Moritz T (2014) Gibberellins inhibit adventitious rooting in hybrid aspen and Arabidopsis by affecting auxin transport. The Plant Journal78, 372–384.

Mora O, Banos V, Regolini M, Carnus J-M (2014) Using scenarios for forest adaptation to climate change: a foresight study of the Landes de Gascogne Forest 2050.Annals of Forest Science71, 313-324.

Muhamed H, Maalouf J-P, Michalet R (2014) Summer drought and canopy opening increase the strength of the oak seedlings-shrub spatial association. Annals of Forest Science70, 345-355.

Muranty H, Jorge V, Bastien C, Lepoittevin C, Bouffier L, Sanchez L (2014) Potential for marker-assisted selection for forest tree breeding: lessons from 20 years of MAS in crops. Tree Genetics & Genomes10, 1491-1510.

Nanayakkara B, Lagane F, Hodgkiss P, Dibley M, Smaill S, Riddell M, Harrington J, Cown D (2014) Effects of induced drought and tilting on biomass allocation, wood properties, compression wood formation and chemical composition of young Pinus radiata genotypes (clones). Holzforschung68, 455–465.

Nsanganwimana F, Pourrut B, Mench M, Douay F (2014) Suitability of  Miscanthus species for managing inorganic and organic contaminated land and restoring ecosystem services. A review. Journal of Environmental Management143, 123-134.

Oßwald W, Fleischmann F, Rigling D, Coelho AC, Cravador A, Diez J, Dalio RJ, Horta Jung M, Pfanz H, Robin C (2014) Strategies of attack and defence in woody plant-Phytophthora interactions. Forest Pathology 44, 169-190.

Piou D, Ioos R (2014) First report of Dothistroma pini, a recent agent of the Dothistroma needle blight, on Pinus radiata in France. Plant Disease98, 841-841.

Plomion C, Chancerel E, Endelman J, Lamy J-B, Mandrou E, Lesur I, Ehrenmann F, Isik F, Bink MCAM, Bouffier L (2014) Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine. BMC genomics15, 171.

Rasmann S, Pellissier L, Defossez E, Jactel H, Kunstler G (2014) Climate-driven change in plant-insect interactions along elevation gradients.Functional Ecology7, 195–211.

Régolini M, Castagneyrol B, Dulaurent-Mercadal A-M, Piou D, Samalens J-C, Jactel H (2014) Effect of host tree density and apparency on the probability of attack by the pine processionary moth. Forest Ecology and Management334, 185-192.

Rigot T, van Halder I, Jactel H (2014) Landscape diversity slows the spread of an invasive forest pest species. Ecography 37, 648–658.

Rimet F, Trobajo R, Mann DG, Kermarrec L, Franc A, Domaizon I, Bouchez A (2014) When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta). Protist165, 245-259.

Schöb C, Michalet R, Cavieres LA, Pugnaire FI, Brooker RW, Butterfield BJ, Cook BJ, Kikvidze Z, Lortie CJ, Xiao S, Al Hayek P, Anthelme F, Cranston BH, García M-C, Le Bagousse-Pinguet Y, Reid AM, le Roux PC, Lingua E, Nyakatya MJ, Touzard B, Zhao L, Callaway RM (2014) A global analysis of bidirectional interactions in alpine plant communities shows facilitators experiencing strong reciprocal fitness costs.New Phytologist202, 95–105.

Soularue JP, Kremer A (2014) Evolutionary responses of tree phenology to the combined effects of assortative mating, gene flow and divergent selection. Heredity 113, 485-494.

Tavares C, Jactel H, van Halder I, Mendel Z, Branco M (2014) A case of ecological specialization in ladybirds: Iberorhyzobius rondensis (Coleoptera: Coccinellidae), potential biocontrol agent of Matsucoccus feytaudi (Hemiptera: Matsucoccidae). Bulletin of Entomological Research104, 367-375.

Thompson I, Okabe K, Parrotta J, Brockerhoff E, Jactel H, Forrester D, Taki H (2014) Biodiversity and ecosystem services: lessons from nature to improve management of planted forests for REDD-plus. Biodiversity and Conservation23, 2613-2635.

Torres-Ruiz JM, Jansen S, Choat B, McElrone A, Cochard H, Brodribb TJ, Badel E, Burlett R, Bouche PS, Brodersen C, Li S, Morris H, Delzon S (2014) Direct micro-CT observation confirms the induction of embolism upon xylem cutting under tension. Plant Physiology, pp. 114.249706.

Urli M, Delzon S, Eyermann A, Couallier V, GarciaValdés R, Zavala MA, Porté AJ (2014) Inferring shifts in tree species distribution using asymmetric distribution curves: a case study in the Iberian mountains.Journal of Vegetation Science25, 147–159.

Urli M, Lamy J-B, Sin F, Burlett R, Delzon S, Porté AJ (2014) The high vulnerability of Quercus robur to drought at its southern margin paves the way for Quercus ilex. Plant Ecology 216, 177-187.

Valladares F, Matesanz S, Guilhaumon F, Araújo MB, Balaguer L, Benito-Garzón M, Cornwell W, Gianoli E, Kleunen M, Naya DE (2014) The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change. Ecology Letters 17, 1351–1364.

Wang Y, Burlett R, Feng F, Tyree MT (2014) Improved precision of hydraulic conductance measurements using a Cochard rotor in two different centrifuges. Journal of Plant Hydraulics1, e-0007

Yang M, Défossez P, Danjon F, Fourcaud T (2014) Tree stability under wind: simulating uprooting with root breakage using a finite element method. Annals of Botany 114, 695-709.

Yguel B, Bailey RI, Villemant C, Brault A, Jactel H, Prinzing A (2014) Insect herbivores should follow plants escaping their relatives. Oecologia176, 521-532.

Yguel B, Courty P-E, Jactel H, Pan X, Butenschoen O, Murray PJ, Prinzing A (2014) Mycorrhizae support oaks growing in a phylogenetically distant neighbourhood. Soil Biology and Biochemistry78, 204–212.

Zenni RD, Lamy J-B, Lamarque LJ, Porté AJ (2014) Adaptive evolution and phenotypic plasticity during naturalization and spread of invasive species: implications for tree invasion biology.Biological Invasions16, 635-644.