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Unité Mixte de Recherche Inra-Univ. Bordeaux 1 "Biodiversité Gènes et Communautés" - Biogeco

Unité mixte de recherche (Inra, Univ. Bordeaux 1)Biodiversité, gènes et communautés (Biogeco) INRA_rvb150Bordeaux1

INRA Bordeaux-Aquitaine

Site de Recherches Forêt-Bois

69 route d'Arcachon

33612 CESTAS Cedex - FRANCE


Publications 2013

Alberto FJ, Aitken SN, Alía R, González-Martinez SC, Hänninen H, Kremer A, Lefèvre F, Lenormand T, Yeaman S, Whetten R (2013) Potential for evolutionary responses to climate change - evidence from tree populations.Global Change Biology19, 1645–1661.

Alberto FJ, Derory J, Boury C, Frigerio J-M, Zimmermann NE, Kremer A (2013) Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea.Genetics195, 495-512.

Baeten L, Verheyen K, Wirth C, Bruelheide H, Bussotti F, Finér L, Jaroszewicz B, Selvi F, Valladares F, Allan E, Ampoorter E, Auge H, Avacariei D, Barbaro L, Barnoaiea I, Bastias CC, Bauhus J, Beinhoff C, Benavides R, Benneter A, Berger S, Berthold F, Boberg J, Bonal D, Brüggemann W, Carnol M, Castagneyrol B, Charbonnier Y, Checko E, Coomes D, Coppi A, Dalmaris E, Danila G, Dawud SM, de Vries W, De Wandeler H, Deconchat M, Domisch T, Duduman G, Fischer M, Fotelli M, Gessler A, Gimeno TE, Granier A, Grossiord C, Guyot V, Hantsch L, Hättenschwiler S, Hector A, Hermy M, Holland V, Jactel H, Joly F-X, Jucker T, Kolb S, Koricheva J, Lexer MJ, Liebergesell M, Milligan H, Müller S, Muys B, Nguyen D, Nichiforel L, Pollastrini M, Proulx R, Rabasa S, Radoglou K, Ratcliffe S, Raulund-Rasmussen K, Seiferling I, Stenlid J, Vesterdal L, von Wilpert K, Zavala MA, Zielinski D, Scherer-Lorenzen M (2013) A novel comparative research platform designed to determine the functional significance of tree species diversity in European forests.Perspectives in Plant Ecology, Evolution and Systematics15, 281-291.

Barbaro L, Dulaurent A-M, Payet K, Blache S, Vetillard F, Battisti A (2013) Winter bird numerical responses to a key defoliator in mountain pine forests.Forest Ecology and Management296, 90-97.

Barnagaud J-Y, Barbaro L, Hampe A, Jiguet F, Archaux F (2013) Species' thermal preferences affect forest bird communities along landscape and local scale habitat gradients.Ecography36, 1218–1226.

Bartholomé J, Salmon F, Vigneron P, Bouvet J-M, Plomion C, Gion J-M (2013) Plasticity of primary and secondary growth dynamics in Eucalyptus hybrids: a quantitative genetics and QTL mapping perspective.BMC Plant Biology13, 120.

Benot M-L, Bittebiere A-K, Ernoult A, Clément B, Mony C (2013) Fine-scale spatial patterns in grassland communities depend on species clonal dispersal ability and interactions with neighbours.Journal of Ecology101, 626-636.

Bes CM, Jaunatre R, Mench M (2013) Seed bank of Cu-contaminated topsoils at a wood preservation site: impacts of copper and compost on seed germination.Environmental Monitoring and Assessment185, 2039-2053.

Bonthoux S, Barnagaud JY, Goulard M, Balent G (2013) Contrasting spatial and temporal responses of bird communities to landscape changes. Oecologia172, 563-574.

Brockerhoff EG, Jactel H, Parrotta JA, Ferraz SFB (2013) Role of eucalypt and other planted forests in biodiversity conservation and the provision of biodiversity-related ecosystem services. Forest Ecology and Management301, 43–50.

Brockerhoff EG, Suckling DM, Roques A, Jactel H, Branco M, Twidle AM, Mastro VC, Kimberley MO (2013) Improving the efficiency of Lepidopteran pest detection and surveillance: Constraints and opportunities for multiple-species trapping.Journal of Chemical Ecology39, 50-58.

Brusini J, Robin C (2013) Mycovirus transmission revisited by in situ pairings of vegetatively incompatible isolates of Cryphonectria parasitica.Journal of Virological Methods187, 435–442.

Brusini J, Robin C, Franc A (2013) To fuse or not to fuse? An evolutionary view of self-recognition systems.Journal of Phylogenetics & Evolutionary Biology1, 103.

Cacas J-L, Buré C, Furt F, Maalouf J-P, Badoc A, Cluzet S, Schmitter J-M, Antajan E, Mongrand S (2013) Biochemical survey of the polar head of plant glycosylinositolphosphoceramides unravels broad diversity.Phytochemistry96, 191-200.

Castagneyrol B, Giffard B, Péré C, Jactel H (2013) Plant apparency, an overlooked driver of associational resistance to insect herbivory.Journal of Ecology101, 418-429.

Chancerel E, Lamy J-B, Lesur I, Noirot C, Klopp C, Ehrenmann F, Boury C, Le Provost G, Label P, Lalanne C (2013) High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.BMC Biology11, 50.

Cochard H, Badel E, Herbette S, Delzon S, Choat B, Jansen S (2013) Methods for measuring plant vulnerability to cavitation: a critical review.Journal of Experimental Botany64, 4779–4791.

Cochard H, Delzon S (2013) Hydraulic failure and repair are not routine in trees.Annals of Forest Science70, 659-661.

Cundy AB, Bardos RP, Church A, Puschenreiter M, Friesl-Hanl W, Müller I, Neu S, Mench M, Witters N, Vangronsveld J (2013) Developing principles of sustainability and stakeholder engagement for "gentle" remediation approaches: The European context.Journal of Environmental Management129, 283-291.

Danjon F, Caplan JS, Fortin M, Meredieu C (2013) Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster.Frontiers in Plant Science4, 402.

Danjon F, Khuder H, Stokes A (2013) Deep phenotyping of coarse root architecture in R. pseudoacacia reveals that tree root system plasticity is confined within its architectural model.PloS ONE8, e83548.

de Lafontaine G, Ducousso A, Lefèvre S, Magnanou E, Petit RJ (2013) Stronger spatial genetic structure in recolonized areas than in refugia in the European beech.Molecular Ecology22, 4397-4412.

Delzon S, Urli M, Samalens J-C, Lamy J-B, Lischke H, Sin F, Zimmermann NE, Porté AJ (2013) Field evidence of colonisation by Holm oak at the northern margin of its distribution range during the Anthropocene period.PLoS ONE8, e80443.

Dorland E, Stevens CJ, Gaudnik C, Corcket E, Rotthier S, Wotherspoon K, Jokerud M, Vandvik V, Soons MB, Hefting MM (2013) Differential effects of oxidised and reduced nitrogen on vegetation and soil chemistry of species-rich acidic grasslands.Water, Air, & Soil Pollution224, 1-13.

Gailing O, Bodénès C, Finkeldey R, Kremer A, Plomion C (2013) Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family.Tree Genetics & Genomes9, 1361-1367.

Giffard B, Barbaro L, Jactel H, Corcket E (2013) Plant neighbours mediate bird predation effects on arthropod abundance and herbivory.Ecological Entomology38, 448-455.

Gimenez O, Abadi F, Barnagaud JY, Blanc L, Buoro M, Cubaynes S, Desprez M, Gamelon M, Guilhaumon F, Lagrange P, Madon B, Marescot L, Papadatou E, Papaïx J, Péron G, Servanty S (2013) How can quantitative ecology be attractive to young scientists? Balancing computer/desk work with fieldwork. Animal Conservation16, 134–136.

Gugerli F, Brandl R, Castagneyrol B, Franc A, Jactel H, Koelewijn H-P, Martin F, Peter M, Pritsch K, Schröder H (2013) Community genetics in the time of next-generation molecular technologies.Molecular Ecology22, 3198-3207.

Guichoux E, Garnier-Géré P, Lagache L, Lang T, Boury C, Petit RJ (2013) Outlier loci highlight the direction of introgression in oaks.Molecular Ecology22, 450-462.

Hampe A, Pemonge M-H, Petit RJ (2013) Efficient mitigation of founder effects during the establishment of a leading-edge oak population.Proceedings of the Royal Society B: Biological Sciences280, 20131070.

Hampe A, Rodriguez-Sanchez F, Dobrowski S, Hu FS, Gavin DG (2013) Climate refugia: from the Last Glacial Maximum to the twenty-first century.New Phytologist197, 16-18.

Hattab N, Hambli R, Motelica-Heino M, Bourrat X, Mench M (2013) Application of neural network model for the prediction of chromium concentration in phytoremediated contaminated soils.Journal of Geochemical Exploration128, 25–34.

Hattab N, Hambli R, Motelica-Heino M, Mench M (2013) Neural network and Monte Carlo simulation approach to investigate variability of copper concentration in phytoremediated contaminated soils.Journal of Environmental Management129, 134-142.

Homolka A, Schueler S, Burg K, Fluch S, Kremer A (2013) Insights into drought adaptation of two European oak species revealed by nucleotide diversity of candidate genes.Tree Genetics & Genomes9, 1179-1192.

Issoufou HB-A, Delzon S, Laurent J-P, Saâdou M, Mahamane A, Cappelaere B, Demarty J, Oï M, Rambal S, Seghieri J (2013) Change in water loss regulation after canopy clearcut of a dominant shrub in Sahelian agrosystems, Guiera senegalensis J. F. Gmel.Trees27, 1011-1022.

Jacquet JS, Bosc A, O'Grady AP, Jactel H (2013) Pine growth response to processionary moth defoliation across a 40-year chronosequence.Forest Ecology and Management293, 29-38.

Kermarrec L, Franc A, Rimet F, Chaumeil P, Humbert JF, Bouchez A (2013) Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.Molecular Ecology Resources13, 607–619.

Koskela J, Lefèvre F, Schueler S, Kraigher H, Olrik DC, Hubert J, Longauer R, Bozzano M, Yrjänä L, Alizoti P, Rotach P, Vietto L, Bordács Sn, Myking T, Eysteinsson T, Souvannavong O, Fady B, De Cuyper B, Heinze B, von Wühlisch G, Ducousso A, Ditlevsen B (2013) Translating conservation genetics into management: Pan-European minimum requirements for dynamic conservation units of forest tree genetic diversity.Biological Conservation157, 39-49.

Lagache L, Klein EK, Guichoux E, Petit RJ (2013) Fine-scale environmental control of hybridization in oaks.Molecular Ecology22, 423-436.

Lagache L, Leger J-B, Daudin J-J, Petit RJ, Vacher C (2013) Putting the biological species concept to the test: using mating networks to delimit species.PLoS ONE8, e68267.

Lamarque LJ, Porté AJ, Eymeric C, Lasnier J-B, Lortie CJ, Delzon S (2013) A test for pre-adapted phenotypic plasticity in the invasive tree Acer negundo L.PLoS ONE8, e74239.

Lander TA, Klein EK, Stoeckel S, Mariette S, Musch B, Oddou-Muratorio S (2013) Interpreting realized pollen flow in terms of pollinator travel paths and land-use resistance in heterogeneous landscapes.Landscape Ecology28, 1769-1783.

Lavergne S, Hampe A, Arroyo J (2013) In and out of Africa: how did the Strait of Gibraltar affect plant species migration and local diversification?Journal of Biogeography40, 24-36.

Le Bagousse-Pinguet Y, Forey E, Touzard B, Michalet R (2013) Disentangling the effects of water and nutrients for studying the outcome of plant interactions in sand dune ecosystems.Journal of Vegetation Science24, 375-383.

Le Provost G, Domergue F, Lalanne C, Campos PR, Grosbois A, Bert D, Meredieu C, Danjon F, Plomion C, Gion J-M (2013) Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait).BMC Plant Biology13, 95.

Lepais O, Roussel G, Hubert F, Kremer A, Gerber S (2013) Strength and variability of postmating reproductive isolating barriers between four European white oak species.Tree Genetics & Genomes9, 841-853.

Martín-García J, Barbaro L, Diez J, Jactel H (2013) Contribution of poplar plantations to bird conservation in riparian landscapes.Silva Fennica47.

Merian P, Bert D, Lebourgeois F (2013) An approach for quantifying and correcting sample size-related bias in population estimates of climate-tree growth relationships. Forest Science59, 444-452.

Muhamed H, Maalouf JP, Michalet R (2013) Summer drought and canopy opening increase the strength of the oak seedlings-shrub spatial association.Annals of Forest Science70, 345-355.

Muhamed H, Touzard B, Le Bagousse-Pinguet Y, Michalet R (2013) The role of biotic interactions for the early establishment of oak seedlings in coastal dune forest communities.Forest Ecology and Management297, 67-74.

Payne RJ, Dise NB, Stevens CJ, Gowing DJ, BEGIN Partners (incl. Gaudnik C, Alard D) (2013) Impact of nitrogen deposition at the species level.Proceedings of the National Academy of Sciences110, 984-987.

Péré C, Jactel H, Kenis M (2013) Response of insect parasitism to elevation depends on host and parasitoid life-history strategies.Biology Letters9, 20130028

Petit RJ, Carlson J, Curtu AL, Loustau M-L, Plomion C, González-Rodríguez A, Sork V, Ducousso A (2013) Fagaceae trees as models to integrate ecology, evolution and genomics.New Phytologist197, 369-371.

Piotti A, Leonardi S, Heuertz M, Buiteveld J, Geburek T, Gerber S, Kramer K, Vettori C, Vendramin GG (2013) Within-population genetic structure in beech (Fagus sylvatica L.) stands characterized by different disturbance histories: Does forest management simplify population substructure?PLoS ONE8, e73391.

Plomion C, Fievet V (2013) Oak genomics takes off... and enters the ecological genomics era.New Phytologist199, 308-310.

REX Consortium* (2013) Heterogeneity of selection and the evolution of resistance.Trends in Ecology & Evolution28, 110-118. *Bourguet D, Delmotte F, Franck P, Guillemaud T, Reboud X, Vacher C, Walker A-S

Saenz-Romero C, Lamy J-B, Loya-Rebollar E, Plaza-Aguilar A, Burlett R, Lobit P, Delzon S (2013) Genetic variation of drought-induced cavitation resistance among Pinus hartwegii populations from an altitudinal gradient.Acta Physiologiae Plantarum35, 2905–2913.

Santini A, Ghelardini L, De Pace C, Desprez-Loustau M-L, Capretti P, Chandelier A, Cech T, Chira D, Diamandis S, Gaitniekis T, Hantula J, Holdenrieder O, Jankovsky L, Jung T, Jurc D, Kirisits T, Kunca A, Lygis V, Malecka M, Marcais B, Schmitz S, Schumacher J, Solheim H, Solla A, Szabò I, Tsopelas P, Vannini A, Vettraino AM, Webber J, Woodward S, Stenlid J (2013) Biogeographical patterns and determinants of invasion by forest pathogens in Europe.New Phytologist197, 238–250.

Scotti-Saintagne C, Dick CW, Caron H, Vendramin GG, Guichoux E, Buonamici A, Duret C, Sire P, Valencia R, Lemes MR, Gribel R, Scotti I (2013) Phylogeography of a species complex of lowland Neotropical rain forest trees (Carapa, Meliaceae). Journal of Biogeography40, 676–692.

Scotti-Saintagne C, Dick CW, Caron H, Vendramin GG, Troispoux V, Sire P, Casalis M, Buonamici A, Valencia R, Lemes MR, Gribel R, Scotti I (2013) Amazon diversification and cross-Andean dispersal of the widespread Neotropical tree species Jacaranda copaia (Bignoniaceae). Journal of Biogeography40, 707–719.

Simonato M, Battisti A, Kerdelhué C, Burban C, Lopez-Vaamonde C, Pivotto I, Salvato P, Negrisolo E (2013) Host and phenology shifts in the evolution of the social moth genus Thaumetopoea.PLoS ONE8, e57192.

Terenina E, Babigumira BM, Le Mignon G, Bazovkina D, Rousseau S, Salin F, Bendixen C, Mormede P (2013) Association study of molecular polymorphisms in candidate genes related to stress responses with production and meat quality traits in pigs.Domestic Animal Endocrinology44, 81–97.

Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G (2013) Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.BMC Genomics14, 236.

Urli M, Porté AJ, Cochard H, Guengant Y, Burlett R, Delzon S (2013) Xylem embolism threshold for catastrophic hydraulic failure in angiosperm trees.Tree Physiology.

Valdés-Rodríguez OA, Sánchez-Sánchez O, Pérez-Vázquez A, Caplan JS, Danjon F (2013) Jatropha curcas L. root structure and growth in diverse soils.The Scientific World Journal2013, 827295.

Vialle A, Feau N, Frey P, Bernier L, Hamelin RC (2013) Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi.Molecular Phylogenetics and Evolution66, 628-644.