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Unité Mixte de Recherche Inra-Univ. Bordeaux 1 "Biodiversité Gènes et Communautés" - Biogeco

Unité mixte de recherche (Inra, Univ. Bordeaux 1)Biodiversité, gènes et communautés (Biogeco) INRA_rvb150Bordeaux1

INRA Bordeaux-Aquitaine

Site de Recherches Forêt-Bois

69 route d'Arcachon

33612 CESTAS Cedex - FRANCE

Haplodiv

Measures of diversity and differenciation from haploid data

This TURBO PASCAL program is based on the paper by Odile Pons and Rémy J. Petit (TAG 1995, 90:462-470).
It computes measures of diversity and differenciation from haploid population genetic data.

The source file should be an ASCII file (its name should have 8 characters maximum: 12345678.txt) and should include the following information :

First line :
Number of cytotypes Number of populations. See the example (example.txt and example.out):

12 41

The program is dimensionned for a maximum number of 25 cytotypes and of 200 populations. If you have more than this, it means the PASCAL program haplodiv.pas should be modified accordingly and re-compiled.
Indicate then the number of individuals having a given cytotype (column) in a given population (row). Example:

0 0 0 0 0 0 0 0 3 1 0 0
0 0 0 0 0 0 0 0 3 0 0 0
0 0 0 0 0 0 0 0 5 0 0 0
0 0 0 3 0 0 0 0 0 0 0 0
etc... (12 colomns x 41 rows)

No column should be empty (no missing haplotype) and each population (row) should be composed of AT LEAST 3 individuals! Download it and Good luck!

Downloads