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Unité Mixte de Recherche Inra-Univ. Bordeaux "Biodiversité Gènes et Communautés" - Biogeco

Unité mixte de recherche (Inra, Univ. Bordeaux 1) Biodiversité, gènes et communautés (Biogeco)

INRA_rvb150  

INRA Bordeaux-Aquitaine
Site de Recherches Forêt-Bois
69 route d'Arcachon
33612 CESTAS Cedex - FRANCE

2018

Castegneyrol B, Damestoy T, Jactel H (2018) La chenille processionnaire du pin: une menace ? Forêt entreprise241:50-57

Delord C, Lassalle G, Oger A, Barloy D, Coutellec MA, Delcamp A, Evanno G, Genthon C, Guichoux E, Le Bail PY (2018) A cost‐and‐time effective procedure to develop SNP markers for multiple species: A support for community genetics. Methods in Ecology and Evolution9(9):1959-1974

Desprez-Loustau M-L, Massot M, Toïgo M, Fort T, Kaya AGA, Boberg J, Braun U, Capdevielle X, Cech T, Chandelier A (2018) From leaf to continent: The multi-scale distribution of an invasive cryptic pathogen complex on oak. Fungal Ecology36:39-50

El Khattabi LA, Brun S, Gueguen P, Chatron N, Guichoux E, Schutz S, Nectoux J, Sorlin A, Quere M, Boudjarane J (2018) Performance of Semiconductor sequencing platform for non‐invasive prenatal genetic screening for fetal aneuploidies: results from a multicenter prospective cohort study in a clinical setting. Ultrasound Obstet Gynecol

Fernández-Manjarrés J, Ruiz-Benito P, Zavala M, Camarero J, Pulido F, Proença V, Navarro L, Sansilvestri R, Granda E, Marqués L Temunovic M, Bertelsmeier C, Drobinski P, Roturier S, Benito-Garzón M,
García de Cortazar-Atauri I, Simon L, Dupas S, Levrel H, Sautier M (2018) Forest adaptation to climate change along steep ecological gradients: The case of the Mediterranean-Temperate transition in South-Western Europe. Sustainability10(9):3065

Gautier F, Eliášová K, Leplé J-C, Vondráková Z, Lomenech A-M, Le Metté C, Label P, Costa G, Trontin J-F, Teyssier C (2018) Repetitive somatic embryogenesis induced cytological and proteomic changes in embryogenic lines of Pseudotsuga menziesii [Mirb.]. BMC Plant Biol18(1):164

Gerber S (2018) An herbiary of plant individuality. Philos Theor Pract Biol10:5

Khennouf H, Chefrour A, Corcket E, Alard D, Vela E (2018) The vegetation of coastal dunes of Jijel (Algeria): proposal for a new Important Plant Area. Revue d'écologie-La Terre et la Vie73(3):345-362

Klepsch M, Zhang Y, Kotowska M, Lamarque L, Nolf M, Schuldt B, Torres-Ruiz J, Qin D-W, Choat B, Delzon S (2018) Is xylem of angiosperm leaves less resistant to embolism than branches? Insights from microCT, hydraulics, and anatomy. J Exp Bot

Lamarque LJ, Corso D, Torres-Ruiz JM, Badel E, Brodribb TJ, Burlett R, Charrier G, Choat B, Cochard H, Gambetta GA (2018) An inconvenient truth about xylem resistance to embolism in the model species for refilling Laurus nobilis L. Annals of Forest Science75(3):88

Lefranc M-P, Ehrenmann F, Kossida S, Giudicelli V, Duroux P (2018) Use of IMGT® databases and tools for antibody engineering and humanization antibody engineering. Pp. 35-69 in Chames P. (eds) Antibody Engineering. Methods in Molecular Biology (Methods and Protocols), vol 907. Humana Press, Totowa, NJ 

Revers F, Benot M-L, Rosebery D, Alard D (2018) La diversité de l’avifaune du cordon dunaire aquitain: quelles influences de l'environnement local et régional ?Faune Aquitaine Publication, #0053

Bouteiller XP, Barraquand F, Garnier-Géré P, Harmand N, Laizet Yh, Raimbault A, Segura R, Lassois L, Monty A, Verdu C, Mariette S, Porté AJ (2018) No evidence for genetic differentiation in juvenile traits between Belgian and French populations of the invasive tree Robinia pseudoacacia. Plant Ecology and Evolution151:5-17

Chandelier A, Massot M, Fabreguettes O, Gischer F, Teng F, Robin C (2018) Early detection of Cryphonectria parasitica by real-time PCR. European Journal of Plant Pathology

Dietrich L, Delzon S, Hoch G, Kahmen A (2018) No role for xylem embolism or carbohydrate shortage in temperate trees during the severe 2015 drought. Journal of Ecology

Fréjaville T, Curt T, Carcaillet C (2018) Higher potential fire intensity at the dry range margins of European mountain trees. Journal of Biogeography

Jactel H, Bonifacio L, van Halder I, Vétillard F, Robinet C, David G (2018) A novel, easy method for estimating pheromone trap attraction range: application to the pine sawyer beetleMonochamus galloprovincialis. Agricultural and Forest Entomology

Mench MJ, Dellise M, Bes CM, Marchand L, Kolbas A, Le Coustumer P, Oustrière N (2018) Phytomanagement of Cu-contaminated soils by high yielding crops at a former wood preservation site: sunflower biomass and ionome, and remediation of soil functions. Frontiers in Ecology and Evolution6:123

Moreira X, Castagneyrol B, Abdala-Roberts L, Berny-Mier y Teran JC, Timmermans BGH, Bruun HH, Covelo F, Glauser G, Rasmann S, Tack AJM (2018) Latitudinal variation in plant chemical defences drives latitudinal patterns of leaf herbivory. Ecography41, 1124-1134

Robson TM, Garzón MB, Beech Cdc (2018) Phenotypic trait variation measured on European genetic trials of Fagus sylvatica L. Scientific Data5:180149

Ruiz-Benito P, Andivia E, Archambeau J, Astigarraga J, Barrientos R, Cruz-Alonso V, Florencio M, Gómez D, Martínez-Baroja L, Quiles P, Rohrer Z, Santos AMC, Velado E, Villén-Pérez S, Morales-Castilla I (2018) Ventajas de la estadística bayesiana frente a la frecuentista: ¿por qué nos resistimos a usarla?Revista Ecosistemas27, 136-139.

Ruiz Daniels R, Taylor RS, Serra-Varela MJ, Vendramin GG, González-Martínez SC, Grivet D (2018) Inferring selection in instances of long-range colonization: The Aleppo pine (Pinus halepensis) in the Mediterranean Basin. Molecular Ecology

Touzot L, Bel-Venner M-C, Gamelon M, Focardi S, Boulanger V, Débias F, Delzon S, Saïd S, Schermer E, Baubet E (2018) The ground plot counting method: A valid and reliable assessment tool for quantifying seed production in temperate oak forests?Forest Ecology and Management430:143-149

Xue K, Zhou J, Van Nostrand J, Mench M, Bes C, Giagnoni L, Renella G (2018) Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand. Environmental Pollution242, 229-238.

Ahmad HB, Lens F, Capdeville G, Burlett R, Lamarque LJ, Delzon S (2018) Intraspecific variation in embolism resistance and stem anatomy across four sunflower (Helianthus annuus L.) accessions. Physiologia Plantarum 163,59-72.

Albertin W, Chernova M, Durrens P, Guichoux E, Sherman DJ, Masneuf-Pomarede I, Marullo P (2018) Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations: Wine/cider S. uvarum strains show specific S. eubayanus introgressions. Yeast 35, 141–156.

Andrieu E, Cabanettes A, Alignier A, Van Halder I, Alard D, Archaux F, Barbaro L, Bouget C, Bailey S, Corcket E (2018) Edge contrast does not modulate edge effect on plants and pollinators. Basic and Applied Ecology 27, 83-95.

Benito Garzón M, González Muñoz N, Wigneron JP, Moisy C, Fernández‐Manjarrés J, Delzon S (2018) The legacy of water deficit on populations having experienced negative hydraulic safety margin. Global Ecology and Biogeography27(3):346-356

Benito-Garzón M, Fady B, Davi H, Vizcaíno-Palomar N, Fernández-Manjarrés J (2018) Trees on the move: using decision theory to compensate for climate change at the regional scale in forest social-ecological systems. Regional Environmental Change: 1-11.

Bertrin V, Boutry S, Alard D, Haury J, Jan G, Moreira S, Ribaudo C (2018) Prediction of macrophyte distribution: The role of natural versus anthropogenic physical disturbances. Applied Vegetation Science

Boulanger V, Dupouey JL, Archaux F, Badeau V, Baltzinger C, Chevalier R, Corcket E, Dumas Y, Forgeard F, Mårell A (2018) Ungulates increase forest plant species richness to the benefit of non‐forest specialists. Global Change Biology2, e485-e495.

Boulanger V , Dupouey J-L , Archaux F, Badeau V , Baltzinger C, Chevalier R, Corcket E, Dumas Y, Forgeard F, Mårell A, Montpied P, Paillet Y, Saïd S, Ulrich E (2018) The role of ungulates in nowadays temperate forests. A response to Fløjgaard et al. Glob Change Biol.

Cannon CH, Brendel O, Deng M, Hipp AL, Kremer A, Kua C-S, Plomion C, Romero‐Severson J, Sork VL (2018) Gaining a global perspective on Fagaceae genomic diversification and adaptation. New Phytologist218, 894-897.

Castagneyrol B, Moreira X, Jactel H (2018) Drought and plant neighbourhood interactively determine herbivore consumption and performance. Scientific Reports8, 5930.

Castagneyrol B, Jactel H, Moreira X, Heard M (2018) Anti‐herbivore defences and insect herbivory: Interactive effects of drought and tree neighbours. Journal of Ecology

Charrier G, Delzon S, Domec J-C, ... (2018) Drought will not leave your glass empty: Low risk of hydraulic failure revealed by long-term drought observations in world’s top wine regions. Science advances4(1):eaao6969

Charrier G, Chuine I, Bonhomme M, Améglio T (2018) Assessing frost damages using dynamic models in walnut trees: exposure rather than vulnerability controls frost risks. Plant, Cell & Environment 41, 1008-1021.

Costa GC, Hampe A, Ledru M‐P, Martinez P, A., Mazzochini GG, Shepard DB, . . . Carnaval AC (2017) Biome stability in South America over the last 30 kyr: Inferences from long‐term vegetation dynamics and habitat modelling. Global Ecology and Biogeography27, 285-297.

Curt T, Frejaville T (2018) Wildfire policy in Mediterranean France: how far is it efficient and sustainable?Risk analysis 38, 472-488.

de Lafontaine G, Napier JD, Petit RJ, Hu FS (2018) Invoking adaptation to decipher the genetic legacy of past climate change. Ecology.

Derocles SA, Bohan DA, Dumbrell AJ, ..., Vacher C, ... (2018) Biomonitoring for the 21st Century: Integrating next-generation sequencing into ecological network analysis. Advances in Ecological Research

Diaz-Espejo A, Fernández JE, Torres-Ruiz JM, Rodriguez-Dominguez CM, Perez-Martin A, Hernandez-Santana V (2018) The Olive Tree Under Water Stress: Fitting the Pieces of Response Mechanisms in the Crop Performance Puzzle. In: Water Scarcity and Sustainable Agriculture in Semiarid Environment, Academic Press, Pages 439-479

der Plas F, Ratcliffe S, Ruiz‐Benito P, Scherer‐Lorenzen M, Verheyen K, Wirth C, Zavala MA, Ampoorter E, Baeten L, Barbaro L, ..., Castagneyrol B, Charbonnier Y,...,  (2018) Continental mapping of forest ecosystem functions reveals a high but unrealised potential for forest multifunctionality. Ecology letters 21, 31-42.

Dória LC, Podadera DS, Arco M, Chauvin T, Smets E, Delzon S, F Lens (2018) Insular woody daisies (Argyranthemum, Asteraceae) are more resistant to drought‐induced hydraulic failure than their herbaceous relatives. Functional Ecology.

Erichsen EO, Budde KB, Sagheb‐Talebi K, Bagnoli F, Vendramin GG, Hansen OK (2018) Hyrcanian forests: Stable rear‐edge populations harbouring high genetic diversity of Fraxinus excelsior, a common European tree species. Diversity and Distributions

Eriksson L, Boberg J, Cech TL, CorcobadoT, Desprez-Loustau M-L, Hietala AM, Horta Jung M, Jung T, Lehtijarvi HTD,  Oskay F, Slavov S, Solheim H, Stenlid J, Oliva J (2018) Invasive forest pathogens in Europe: Cross-country variation in public awareness but consistency in policy acceptability. Ambio

Fernandez‐Conradi P, Jactel H, Robin C, Tack AJM, Castagneyrol B (2017) Fungi reduce preference and performance of insect herbivores on challenged plants. Ecology99, 300-311.

Firmat C, Delzon S, Louvet JM, Parmentier J, Kremer A (2018) Evolutionary dynamics of the leaf phenological cycle in an oak metapopulation along an elevation gradient. Journal of Evolutionary Biology 30, 2116-2131.

Fitzek E, Delcamp A, Guichoux E, Hahn M, Lobdell M, Hipp AL (2018) A nuclear DNA barcode for eastern North American oaks and application to a study of hybridization in an arboretum setting. Ecologyand Evolution.

Fréjaville T, Benito Garzón M (2018) The EuMedClim database: Yearly climate data (1901–2014) of 1 km resolution grids for Europe and the Mediterranean basin. [Data Report]. Frontiers in Ecology and Evolution6(31).

Gleiser G, Chybicki IJ, González‐Martínez SC, Aizen MA (2018) Phenological match drives pollen‐mediated gene flow in a temporally dimorphic tree. Plant Biology20: 93-100.

González-Muñoz N, Sterck F, Torres-Ruiz JM, Petit G, Cochard H, von Arx G, …, Capdeville G,. . . Delzon S (2018) Quantifying in situ phenotypic variability in the hydraulic properties of four tree species across their distribution range in Europe. PLOS ONE13(5).

Grossman JJ, Vanhellemont M, Barsoum N, Bauhus J, Bruelheide H, Castagneyrol B, Cavender-Bares J, Eisenhauerf N, …, Jactel H, …, Verheyen K  (2018) Synthesis and future research directions linking tree diversity to growth, survival, and damage in a global network of tree diversity experiments. Environmental and Experimental Botany.

Gschloessl B, Dorkeld F, Berges H, ... Burban C, ... (2018) Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae). Molecular ecology resources

Jactel H, Gritti ES, Drössler L, Forrester DI, Mason WL, Morin X et al. (2018) Positive biodiversity–productivity relationships in forests: climate matters. Biology Letters14.

Jinagool W, Lamacque L, Delmas M, Delzon S, Cochard H, Herbette S (2018) Is there variability for xylem vulnerability to cavitation in walnut tree cultivars and species (Juglans spp.)?HortScience53, 132-137.

Keck F, Franc A, Kahlert M (2018) Disentangling the processes driving the biogeography of freshwater diatoms: A multiscale approach. Journal of Biogeography.

Khennouf H, Chefrour A, Corcket E, Alard D, Véla E (2018) La végétation dunaire du littoral de Jijel (Algérie) : proposition d’un nouvelle zone importante pour les plantes. Revue d’Ecologie (Terre et Vie)73, 344-361.

Kolbas A, Kolbas N, Marchand L, Herzig R, Mench M (2018) Morphological and functional responses of a metal-tolerant sunflower mutant line to a copper-contaminated soil series. Environmental Science and Pollution Research.

Lahaye S, Curt T, Fréjaville T, Sharples J, Paradis L, Hély C (2018) What are the drivers of dangerous fires in Mediterranean France? International Journal of Wildland Fire27, 155-163.

Leblois R, Gautier M, Rohfritsch A, Foucaud J, Burban C, et al. (2018) Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa. Molecular ecology.

Leese F, Bouchez A, Abarenkov K, ..., Franc A, ... (2018) Why we need sustainable networks bridging countries, disciplines, cultures and generations for Aquatic Biomonitoring 2.0: A Perspective derived from the DNAqua-Net COST Action. Advances in Ecological Research

Lesur I, Alexandre H, Boury C, Chancerel E, Plomion C, Kremer A (2018) Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand. Front. Plant Sci.

Lobo A, Torres-Ruiz JM, Burlett R, Lemaire C, Parise C, Francioni C, Truffaut L, Tomášková I, Kehlet Hansen J, Erik Dahl Kjær, Kremer A, Delzon S (2018). Assessing inter- and intraspecific variability of xylem vulnerability to embolism in oaks. Forest Ecology and Management424, 53-61.

Lowe AJ, Breed MF, Caron H, et al. (2018) Standardized genetic diversity‐life history correlates for improved genetic resource management of Neotropical trees. Diversity and Distributions

Mairal M, Caujape-Castells J, Pellissier L, Jaen-Molina R, Alvarez N, Heuertz M, Sanmartin I (2018) A tale of two forests: ongoing aridification drives population decline and genetic diversity loss at continental scale in Afro-Macaronesian evergreen-forest archipelago endemics. Ann Bot

Michalecka M, Masny S, Leroy T, Puławska J (2018) Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation. BMC Evolutionary Biology18: 5.

Moracho E, Jordano P, Hampe A (2018) Drivers of tree fecundity in pedunculate oak (Quercus robur) refugial populations at the species’ southwestern range margin. Plant Biology20, 195-202.

Moreira X, Abdala‐Roberts L, Castagneyrol B (2018) Interactions between plant defence signalling pathways: Evidence from bioassays with insect herbivores and plant pathogens. Journal of Ecology.

Morin X, Fahse L, Jactel H, Scherer-Lorenzen M, García-Valdés R, Bugmann H (2018) Long-term response of forest productivity to climate change is mostly driven by change in tree species composition. Scientific Reports8, 5627.

Mosca E, Di Pierro EA, Budde KB, Neale DB, González‐Martínez SC (2018) Environmental effects on fine‐scale spatial genetic structure in four alpine keystone forest tree species. Molecular Ecology27, 647-658.

Olsson S, Pinosio S, González-Martínez SC, Abascal F, Mayol M, Grivet D, Vendramin GG (2018) De novo assembly of English yew (Taxus baccata) transcriptome and its applications for intra- and inter-specific analyses. Plant Molecular Biology

Ouayjan A, Hampe A (2018) Extensive sib-mating in a refugial population of beech (Fagus sylvatica) growing along a lowland river. Forest Ecology and Management407: 66-74.

Paquette A, Hector A, Castagneyrol B, Vanhellemont M, Koricheva J, Scherer-Lorenzen M, Verheyen K (2018) A million and more trees for science. Nature Ecology & Evolution2, 763-766.

Petit G, Arx G, Kiorapostolou N, Lechthaler S, Prendin AL, Anfodillo T, Caldeira MC, Cochard H, Copini P, Crivellaro A, Delzon S, Gebauer R, Gričar J, Grönholm L, Hölttä T, Jyske T, Lavrič M, Lintunen A, Lobo‐do‐Vale R, Peltoniemi M, Peters RL, Robert EMR, Roig Juan S, Senfeldr M, Steppe K, Urban J, Van Camp J, Sterck F (2018) Tree differences in primary and secondary growth drive convergent scaling in leaf area to sapwood area across Europe. New Phytologist.

Plomion C, Aury J-M, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé J-C, Chantret N, Chen J, Diévart A, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Bogeat-Triboulot M-B, Bouffaud M-L, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau M-L, Luyten I, Madoui M-A, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rué O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, Salse J (2018) Oak genome reveals facets of long lifespan. Nature Plants

Schröder P, Beckers B, Daniels S, ..., Mench M, ... (2018) Intensify production, transform biomass to energy and novel goods and protect soils in Europe—A vision how to mobilize marginal lands. Science of the Total Environment616-617, 1101-1123.

Staedel C, Tran TPA, Giraud J, …, Salin F, … (2018) Modulation of oncogenic miRNA biogenesis using functionalized polyamines. Scientific Reports8, 1667

Stojnić S, Suchocka M, Benito-Garzón M, Torres-Ruiz J, Cochard H, Bolte A, Cocozza C, Cvjetković B, de Luis M, Martinez-Vilalta J,..., Delzon S (2018) Variation in xylem vulnerability to embolism in European beech from geographically marginal populations. Tree physiology38, 173-185.

Vacchiano G, Ascoli D, Berzaghi F, Lucas-Borja ME, Caignard T, Collalti A et al. (2018) Reproducing reproduction: How to simulate mast seeding in forest models. Ecological Modelling376, 40-53.

Valdés-Correcher E, Rodriguez E, Kemp YJM, Wassen MJ, Cromsigt JPGM (2018) Comparing the impact of a grazing regime with European bison versus one with free-ranging cattle on coastal dune vegetation in the Netherlands. Mammal Research.

Veltsos P, Cossard G, Beaudoing E, Beydon G, Bianchi DS, Roux C, González-Martínez SC, Pannell JR (2018) Size and content of the sex-determining region of the Y chromosome in dioecious Mercurialis annua, a plant with homomorphic sex chromosomes.Genes9(6), 277.

Villemey A, Jeusset A, Vargac M, ..., Castagneyrol B, Jactel H, ... (2018) Can linear transportation infrastructure verges constitute a habitat and/or a corridor for insects in temperate landscapes? A systematic review. Environmental Evidence7(1):5

Wagner S, Lagane F, Seguin‐Orlando A, Schubert M, Leroy T, Guichoux E, Chancerel E, Bech‐Hebelstrup I, Bernard V, Billard C, Billaud Y, Bolliger M, Croutsch C, Čufar K, Eynaud F, Heussner KU, Köninger J, Langenegger F, Leroy F, Lima C, Martinelli N, Momber G, Billamboz A, Nelle O, Palomo A, Piqué R, Ramstein M, Schweichel R, Stäuble H, Tegel W, Terradas X, Verdin F, Plomion C, Kremer A, Orlando L (2018) High‐Throughput DNA sequencing of ancient wood. Molecular ecology

Wan Q, Zheng Z, Benito-Garzón M, Petit RJ (2018) Inconsistent inter-and intraspecific differentiation of climate enveloppes in a subtropical tree. Journal of Plant Ecology

Xu J, Budde KB, Hansen OK, Thomsen IM, Ravn HP, Nielsen, Ulrik B (2018) Do silver fir woolly adelgids (Dreyfusia nordmannianae) facilitate pathogen infestation with Neonectria neomacrospora on Christmas trees (Abies nordmanniana)?Forest Ecology and Management424, 396-405.

Yang M, Défossez P, Danjon F, Fourcaud T (2018) Analyzing key factors of roots and soil contributing to tree anchorage of Pinus species. Trees

Zhang Y, Lamarque LJ, Torres-Ruiz JM, ..., Burlett R, ..., Delzon S, .. (2018) Testing the plant pneumatic method to estimate xylem embolism resistance in stems of temperate trees. Tree Physiology