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UMR 1332 Biologie du Fruit et Pathologie

Recent publications of the team OrFE

Recent publications :

1. Published articles (with peer review)

2018

Bollier, N., Sicard, A., Leblond, J., Latrasse, D., Gonzalez, N., Gevaudant, F., Benhamed, M., Raynaud, C., Lenhard, M., Chevalier, C., Hernould, M., Delmas, F. (2018). At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 30, 83-100. , DOI : 10.1105/tpc.17.00653

Pirrello, J., Deluche, C., Frangne, N., Gevaudant, F., Maza, E., Djari, A., Bourge, M., Renaudin, J.-P., Brown, Bowler, C., Zouine, M., Chevalier, C., Gonzalez, N. (2018). Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation. Plant Journal, 93, 387-398. DOI : 10.1111/tpj.13783

2017

Denoyes, B., Amaya, I., Liston, A., Tennessen, J., Ashman, T.-L., Whitaker, V., Hytönen, T., van de Weg, E., Osorio, S., Folta, K., Slovin, J., Harrison, R., Monfort, A., Bassil, N. (2017). Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come. Acta Horticulturae, 1156, 13-24. DOI : 10.17660/ActaHortic.2017.1156.3

Musseau, C., Just, D., Jorly, J., Gevaudant, F., Moing, A., Chevalier, C., Lemaire-Chamley, M., Rothan, C., Fernandez, L. (2017). Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. Frontiers in Plant Science, 8. DOI : 10.3389/fpls.2017.00988

Renaudin, J.-P., Deluche, C., Cheniclet, C., Chevalier, C., Frangne, N. (2017). Cell layer-specific patterns of cell division and cell expansion during fruit set and fruit growth in tomato pericarp. Journal of experimental botany, 68 (7), 1613-1623. DOI : 10.1093/jxb/erx058

Salinas, N. R., Zurn, J. D., Mathey, M., Mookerjee, S., Denoyes, B., Perrotte, J., Potier, A., Finn, C. E., Hancock, Stewart, P., Bassil (2017). Validation of molecular markers associated with perpetual flowering in Octoploid Fragaria germplasm. Molecular Breeding, 37 (5), 70. DOI : 10.1007/s11032-017-0672-2

Tenreira, T., Pimenta Lange, M. J., Lange, Bres, C., LABADIE, M., Monfort, A., Hernould, M., Rothan, C., Denoyes, B. (2017). A Specific Gibberellin 20-oxidase Dictates the Flowering-Runnering Decision in Diploid Strawberry. Plant Cell, 28, 2168-2182. DOI : 10.1105/tpc.16.00949

Verma, S., Bassil, N., van de Weg, E., Harrison, R., Monfort, A., Hidalgo, Amaya, I., Denoyes, B., Mahoney, L., Davis, Fan, Knapp, S., Whitaker (2017). Development and evaluation of the Axiom® IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria ×ananassa. Acta Horticulturae, 1156, 75-82. . DOI : 10.17660/ActaHortic.2017.1156.10

Verma, S., Zurn, J. D., Salinas, Mathey, M. M., Denoyes, B., Hancock, J. F., Finn, C. E., Bassil, Whitaker, V. M. (2017). Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria×ananassa) breeding populations using pedigree-based QTL analysis. Horticulture Research, 4, 17062. DOI : 10.1038/hortres.2017.62

2016

Clauw, P., Coppens, F., Korte, A., Herman, D., Slabbinck, B., Dhondt, S., Van Daele, T., De Milde, L., Vermeersch, M., Maleux, K., Maere, S., Gonzalez, N., Inzé, D. (2016). Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture. The Plant cell, 28 (10), 2417-2434. DOI : 10.1105/tpc.16.00483

Perrotte, J., Guédon, Y., Gaston, A., Denoyes, B. (2016). Identification of successive flowering phases highlights a new genetic control of the flowering pattern in strawberry. Journal of experimental botany, 67 (19), 5643-5655. DOI : 10.1093/jxb/erw326

Verdu, C. F., Guichoux, E., Quevauvillers, S., De Thier, O., Laizet, Y., Delcamp, A., Gevaudant, F., Monty, A., Porte, A., Lejeune, P., Lassois, L., Mariette, S. (2016). Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacaciaL. Ecology and Evolution, 6 (20), 7323-7333. DOI : 10.1002/ece3.2466

2015

Azzi, L., Deluche, C., Gévaudant, F., Frangne, N., Delmas, F., Hernould, M., Chevalier, C. (2015). Fruit growth-related genes in tomato. Journal of experimental botany, 66 (4), 1075-86. DOI : 10.1093/jxb/eru527

Bassil, NV., Davis, TM., Zhang, H., Ficklin, S., Mittmann, M., Webster, T., Mahoney, L., Wood, D., Alperin, ES., Rosyara, UR., Koehorst-Vanc Putten, H., Monfort, A., Sargent, DJ., Amaya, I., Denoyes, B., Bianco, L., van Dijk, T., Pirani, A., Iezzoni, A., Main, D., Peace, C., Yang, Y., Whitaker, V., Verma, S., Bellon, L., Brew, F., Herrera, R., van de Weg, E (2015). Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC genomics, 16, 155. DOI : 10.1186/s12864-015-1310-1

Sánchez-Sevilla, JF., Horvath, A., Botella, MA., Gaston, A., Folta, K., Kilian, A., Denoyes, B., Amaya, I (2015). Diversity Arrays Technology (DArT) Marker Platforms for Diversity Analysis and Linkage Mapping in a Complex Crop, the Octoploid Cultivated Strawberry (Fragaria × ananassa). PloS one, 10 (12), e0144960. DOI : 10.1371/journal.pone.0144960

 2014

Chevalier C, Bourdon M, Pirrello J, Cheniclet C, Gevaudant F, Frangne N. (2014). Endoreduplication and fruit growth in tomato: evidence in favour of the karyoplasmic ratio theory. Journal of Experimental Botany 65: 2731-2746. DOI : 10.1093/jxb/ert366

Pirrello J, Bourdon M, Cheniclet C, Bourge M, Brown S, Renaudin JP, Frangne N and Chevalier C (2014). How fruit developmental biology makes use of flow cytometry approaches. Cytometry Part A, 85: 115-125. DOI : 10.1002/cyto.a.22417

Su L, Bassa C, Audran C, Cheniclet C, Chevalier C, Bouzayen M, Roustan JP, Chervin C (2014). The auxin response Sl-IAA17 transcriptional repressor controls fruit size via the regulation of the endoreduplication-related cell expansion. Plant Cell Physiology, 55 (11): 1969-1976. DOI : 10.1093/pcp/pcu124

2013

Ahmad JN, Garcion C, Teyssier E, Hernould M, Gallusci P, Pracros P, Renaudin J, and Eveillard S (2013). Stolbur phytoplasma infection affects DNA methylation processes in tomato plants. Plant Pathology 62:205-216. DOI : 10.1111/j.1365-3059.2012.02605.x

Delmas F, Sankaranarayanan S, Deb S, Widdup E, Bournonville C, Bollier N, Northey JG, McCourt P, Samuel MA. 2013). ABI3 controls embryo degreening through Mendel's I locus. Proc Natl Acad Sci USA. 110: E3888–E3894. DOI : 10.1073/pnas.1308114110

Gaston A, Perrotte J, Lerceteau-Köhler E, Rousseau-Gueutin M, Petit A, Hernould M, Rothan C, Denoyes B. (2013) PFRU, a single dominant locus regulates the balance between sexual and asexual plant reproduction in cultivated strawberry. Journal of Experimental Botany 64:1837-1848. DOI: 10.1093/jxb/ert047

Peralta DA, Araya A, Nardi CF, Busi MV and Gomez-Casati DF (2013) Characterization of the Arabidopsis thaliana E3 Ubiquitin-Ligase AtSINAL7 and identification of the ubiquitination sites. PLoS One 8(8): e73104. DOI : 10.1371/journal.pone.0073104

Pirrello J, Bourdon M, Cheniclet C, Coriton O, Bourge M, Brown S, Renaudin JP, Frangne N, Chevalier C (2013). The structural and molecular analysis of endoreduplicated nuclei in tomato (Solanum lycopersicum) fruit provides evidence for a ploidy‐dependent increase in transcriptional activity. Plant Biotechnology, 30, 301-308. DOI : 10.5511/plantbiotechnology.13.0319b

Ring L, Yeh S-Y, Huecherig S, Hoffmann T, Blanco-Portales R, Fouche M, Villatoro C, Denoyes B, Monfort A, Caballero JL, Munoz-Blanco J, Gershenson J, Schwab W (2013). Metabolic interaction between anthocyanin and lignin biosynthesis is associated with peroxidase FaPRX27 in Strawberry fruit. Plant Physiology 163: 43-60. DOI : 10.1104/pp.113.222778

2012

Bourdon M, Pirrello J, Cheniclet C, Coriton O, Bourge M, Brown S, Moïse A, Peypelut M, Rouyère V, Renaudin JP, Chevalier C, Frangne N. (2012) Evidence for karyoplasmic homeostasis during endoreduplication and a ploidy-dependent increase in gene transcription during tomato fruit growth. Development. 139: 3817-3826. DOI: 10.1242/dev.084053

Diamanti J, Sguigna V, Capocasa F, Denoyes B, Petit A, Chartier P, Faedi W, Maltoni ML, Battino M Mezzetti B (2012). Standardized method for evaluation of strawberry (Fragaria x ananassa Duch.) germplasm collections as a genetic resource for fruit nutritional compounds. Journal of Food Composition and Analysis 28: 170-178. DOI: 10.1016/j.jfca.2012.07.007

Iwata H, Gaston A, Remay A, Thouroude T, Jeauffre J, Kawamura K, Oyant LH, Araki T, Denoyes B, Foucher F. (2012) The TFL1 homologue KSN is a regulator of continuous flowering in rose and strawberry. Plant Journal 69: 116-125. DOI: 10.1111/j.1365-313X.2011.04776.x

Lerceteau-Köhler E, Moing A, Guérin G, Renaud C, Petit A., Rothan C and Denoyes B (2012) Genetic dissection of fruit quality traits in the octoploid cultivated strawberry highlights the role of homoeo-QTL in their control. Theoretical and Applied Genetics, 124:1059-1077. DOI: 10.1007/s00122-011-1769-3

2011

Bourdon M, Coriton O, Pirrello J., Cheniclet C, Brown SC, Poujol C, Chevalier C, Renaudin JP, Frangne N. (2011). In planta quantification of endoreduplication using Fluorescent In Situ Hybridization (FISH). Plant Journal, 66: 1089-1099.

Chevalier, C., Nafati, M., Mathieu-Rivet, E., Bourdon M., Frangne, N., Cheniclet, C., Renaudin J.-P. Gévaudant, F., Hernould, M. (2011). Elucidating the functional role of endoreduplication in tomato fruit development. Annals of Botany, 107: 1159-1169.

Nafati, M., Cheniclet, C., Hernould, M., Do, P.T., Fernie, A., Chevalier, C., Gévaudant, F. (2011). The specific overexpression of a Cyclin Dependent Kinase Inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth. Plant Journal, 65: 543-556.

2010

Mathieu-Rivet, E., Gévaudant, F., Sicard, A., Salar, S., Do, P.T., Mouras, A., Fernie, A., Gibon, Y., Rothan, C., Chevalier, C., Hernould, M. (2010). The functional analysis of the Anaphase Promoting Complex activator CCS52A highlights the crucial role of endoreduplication for fruit growth in tomato. The Plant Journal, 62: 727-741.

Nafati, M., Frangne, N., Hernould, M., Chevalier, C., Gévaudant, F. (2010). Functional characterization of the tomato Cyclin-Dependent Kinase inhibitor SlKRP1 domains involved in protein-protein interactions. New Phytologist.188: 136-149.

Séveno M., Séveno-Carpentier E., Voxeur A., Menu-Bouaouiche L., Rihouey C., Delmas F., Chevalier C., Driouich A. and Lerouge P. (2010). Characterization of a putative 3-deoxy-d-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana. Glycobiology, 20: 617-628.

2009

Fernandez AI, Viron N, Alhagdow M, Karimi M, Jones M, Amsellem Z, Sicard A, Czerednik A, Angenent G, Grierson D, May S, Seymour G, Eshed Y, Lemaire-Chamley M, Rothan C, Hilson P. (2009). Flexible tools for gene expression and silencing in tomato.   Plant Physiol. 151: 1729-1740

Mahjoub A, Hernould M, Joubès J, Decendit A, Mars M, Barrieu F, Hamdi S and Delrot S. (2009). Overexpression of a grapevine R2R3-MYB factor in tomato affects vegetative development, flower morphology and flavonoid and terpenoid metabolism. Plant Physiology and Biochemistry 47: 551-61.

Séveno M, Voxeur A, Rihouey C, Wu AM, Ishii T, Chevalier C, Ralet MC, Driouich A, Marchant A, Lerouge P. (2009). Structural characterisation of the pectic polysaccharide rhamnogalacturonan II using an acidic fingerprinting methodology. Planta 230: 947-957.

Wang H, Schauer N, Usadel B, Frasse P, Zouine M, Hernould M, Latché A, Pech J-C, Fernie A and Bouzayen M. (2009). Regulatory Features Underlying Pollination-Dependent and -Independent Tomato Fruit Set Revealed by Transcript and Primary Metabolite Profiling. Plant Cell. 21:1428-52.

2. Book chapters

CHEVALIER C. (2007) Cell cycle control and fruit development. In Cell cycle control and plant development. In Annual Plant Reviews, vol. 32, pp269-290. D. Inzé Ed. Blackwell Publishing.

Bourdon M., Frangne N., Mathieu-Rivet E., Nafati M., Cheniclet C., Renaudin J.-P., Chevalier C. (2010). Endoreduplication and growth of fleshy fruits. In Progress in Botany (Lüttge, U. et al., eds). Heidelberg: Springer-Verlag. vol. 71, pp. 101-132.

Denoyes, B., Amaya, I., Liston, A., Tennessen, J., Ashman, T.-L., Whitaker, V., Hytönen, T., van de Weg, E., Osorio, S., Folta, K., Slovin, J., Harrison, R., Monfort, A., Bassil, N. (2017). Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come. In: Proceedings of the VIII International Strawberry Symposium (p. 13-24). Acta Horticulturae, 1156. Presented at 8. International Strawberry Symposium, Quebec, CAN (2016-08-13 - 2016-08-17). Leuven, BEL : International Society for Horticultural Science (ISHS). DOI : 10.17660/ActaHortic.2017.1156.3

Verma, S., Bassil, N., van de Weg, E., Harrison, R., Monfort, A., Hidalgo, Amaya, I., Denoyes, B., Mahoney, L., Davis, Fan, Knapp, S., Whitaker (2017). Development and evaluation of the Axiom® IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria ×ananassa. In: Proceedings of the VIII International Strawberry Symposium (p. 75-82). Acta Horticulturae, 1156. Presented at 8. International Strawberry Symposium, Quebec, CAN (2016-08-13 - 2016-08-17). Leuven, BEL : International Society for Horticultural Science (ISHS). DOI : 10.17660/ActaHortic.2017.1156.102016

3. Patents

Chevalier C, Decroocq V, Delmas F, Hernould M, Leblond J, Sicard A (2011). Brevet déposé  à l’international PCT/EP2012/063513, intitulé « Procédé d’amélioration de la résistance des plantes aux virus » (n° d’enregistrement national FR1156258).

4. Thesis

AZZI Lamia. (Université de Bordeaux). Etude du rôle de FW2.2 dans le développement du fruit de tomate.

Soutenue le 16 décembre 2013.

PERROTTE Justine. (Université de Bordeaux). Optimisation du potentiel de floraison chez le fraisier cultivé.

Soutenue le 19 décembre 2013.

LEBLOND Julie (Université Bordeaux). Caractérisation de l’interaction des protéines IMA/MIF2 et CSN5 au niveau moléculaire et physiologique.

Soutenue le 19 décembre 2011.

BOURDON Matthieu (Université de Bordeaux). L’endoréduplication dans le développement du fruit de tomate : de la structure à la croissance cellulaire. Soutenue le 13 janvier 2011.

NAFATI Mehdi (Université de Bordeaux). Caractérisation fonctionnelle des inhibiteurs de Cyclin-Dependent Kinase (CDK) dans le fruit de tomate (Solanum lycopersicum). Soutenue le 18 juin 2010.

MATHIEU-RIVET Elodie (Université de Bordeaux). Etude du rôle de l’activateur de l’APC/CCS52 dans la transition du cycle mitotique vers l’endocycle au cours du développement du fruit de tomate (Solanum lycopersicum Mill). Soutenue le 1 décembre 2009.

SICARD Adrien (Université de Bordeaux 2). Etude du rôle du gène Matriochka au cours du développement de la fleur et des ovules chez la tomate. Soutenance le 6 juillet 2007.

VAN OOSTENDE Chloë (Université de Bordeaux 1). Analyse quantitative des réponses précoces à l'auxine dans une suspension de cellules de tabac. Soutenue le 6 octobre 2006.

Gonzalez Nathalie (Université de Bordeaux 2). Etude du rôle de la kinase WEE1 dans le contrôle du cycle cellulaire et de l'endoréduplication au cours de l’organogenèse du fruit de tomate (Solanum lycopersicum Mill.). Soutenue le 9 décembre 2005.