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UMR 1332 Biologie du Fruit et Pathologie

Selected recent publications - Plant Virology team

 Published articles (with peer review)

2018

Bastet, A., Lederer, B., Giovinazzo, N., Arnoux, X., German-Retana, S., Reinbold, C., Brault, V., Garcia, D., Djennane, S., Gersch, S., Lemaire, O., Robaglia, C., Gallois, JL (2018). Trans-species synthetic gene design allows resistance pyramiding and broad-spectrum engineering of virus resistance in plants. Plant biotechnology journal. , DOI : 10.1111/pbi.12896

Candresse, T., Theil, S., Faure, C., Marais, A. (2018). Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine. Archives of Virology, 163 (1), 277-280. , DOI : 10.1007/s00705-017-3587-7

Charon, J. (Auteur de correspondance), Barra, A., Walter, J., Millot, P., Hébrard, E., Moury, B. (Auteur de correspondance), Michon, T. (Auteur de correspondance) (2018). First experimental assessment of protein intrinsic disorder involvement in an RNA virus natural adaptive process. Molecular Biology and Evolution, 35 (1), 38-49. , DOI : 10.1093/molbev/msx249

Hily, J.-M., Demanèche, S., Poulicard, N., Tannières, M., Djennane, S., Beuve, M., Vigne, E., Demangeat, G., Komar, V., Gertz, C., Marmonier, A., Hemmer, C., Vigneron, S., Marais, A., Candresse, T., Simonet, P., Lemaire, O. (2018). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 16 (1), 208-220. , DOI : 10.1111/pbi.12761

Koloniuk, I., Sarkisova, T., Petrzik, K., Lenz, O., Přibylová, J., Fránová, J., Špak, J., Lotos, L., Beta, C., Katsiani, A., Candresse, T., Maliogka, VI (2018). -Infecting Fabaviruses with the Aid of High-Throughput Sequencing. Viruses, 10 (4). , DOI : 10.3390/v10040204

Lamichhane, J. R. (Auteur de correspondance), Arseniuk, E., Boonekamp, P., Czembor, J., Decroocq, V., Enjalbert, J., Finckh, M. R., Korbin , M., Koppel , M., Kudsk, P., Mesterhazy , A., Sosnowska, D., Zimnoch-Guzowska , E., Messean, A. (2018). Advocating a need for suitable breeding approaches to boost Integrated Pest Management: A European perspective. Pest Management Science, 74 (6), 1219-1227, DOI : 10.1002/ps.4818

Marais, A., Faure, C., Bergey, B., Candresse, T (2018). Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing. Methods in molecular biology (Clifton, N.J.), 1746, 45-53. , DOI : 10.1007/978-1-4939-7683-6_4

Marais, A., Faure, C., Theil, S., Candresse, T (2018). Molecular Characterization of a Novel Species of Capillovirus from Japanese Apricot (Prunus mume). Viruses, 10 (4), 144. , DOI : 10.3390/v10040144

Marais, A., Nivault, A., Faure, C., Comont, G., Theil, S., Candresse, T., Corio-Costet, M.-F. (2018). Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Neofusicoccum luteum. Archives of Virology, 163 (2), 559–562. , DOI : 10.1007/s00705-017-3620-x

Michel, V., Julio, E., Candresse, T., Cotucheau, J., Decorps, C., Volpatti, R., Moury, B., Glais, L., Dorlhac de Borne, F., Decroocq, V., German-Retana, S. (2018). NtTPN1 : a RPP8 -like R gene required for Potato virus Y -induced veinal necrosis in tobacco. The Plant Journal, Online first. , DOI : 10.1111/tpj.13980

Rumbou, A., Candresse, T., Marais, A., Theil, S., Langer, J., Jalkanen, R., Büttner, C (2018). A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease. Plos One, 13 (3), e0193888. , DOI : 10.1371/journal.pone.0193888

Šafářová, D., Candresse, T., Navrátil, M. (2018). Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Archives of Virology, 163 (2), 567-570. , DOI : 10.1007/s00705-017-3629-1

Sorrentino, R., Marais, A., Faure, C., Theil, S., Alioto, D., Candresse, T. (2018). First report of Peach-associated Luteovirus in nectarine (Prunus persica) in Italy. Plant Disease, First Look. , DOI : 10.1094/PDIS-01-18-0012-PDN

Svanella-Dumas, L., Theil, S., Barret, M., Candresse, T. (Auteur de correspondance) (2018). Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish. Archives of Virology, Online First. DOI : 10.1007/s00705-017-3693-6

Svanella-Dumas, L., Τsarmpopoulos, Ι., Marais, A., Theil, S., Faure, C., Gaudin, J., Candresse, T (2018). Complete genome sequence of lettuce chordovirus 1 isolated from cultivated lettuce in France. Archives of virology. , DOI : 10.1007/s00705-018-3858-y

Verdin, E., Marais, A., Wipf-Scheibel, C., Faure, C., Pelletier, B., David, P., Svanella-Dumas, L., Poisblaud, Lecoq, H., Candresse, T. (Auteur de correspondance) (2018). Biological and genetic characterization of new and known necroviruses causing an emerging systemic necrosis disease of corn salad (Valerianella locusta L.) in France. Phytopathology, Accepted for publication, 35 p. , DOI : 10.1094/PHYTO-08-17-0284-R

2017

Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017). Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening. BMC Plant Biology, 17 (1), 167. DOI : 10.1186/s12870-017-1116-1

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Nectarine stem pitting-associated virus Infecting Prunus mume in Japan. Plant Disease, 101 (2), 393. DOI : 10.1094/PDIS-09-16-1323-PDN

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Plum bark necrosis stem pitting-associated virus Infecting Flowering Cherry in Japan. Plant Disease, 101 (5), 846. DOI : 10.1094/PDIS-09-16-1324-PDN

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First report of American plum line pattern virus infecting flowering cherry (Prunus serrulata Lindl.) in Japan. Plant Disease, First Look. DOI : 10.1094/PDIS-04-17-0494-PDN

Candresse, T., Faure, C., Theil, S., Beuve, M., Lemaire, O., Spilmont, M., Marais, A. (2017). First Report of Grapevine asteroid mosaic-associated virus Infecting Grapevine (Vitis vinifera) in France. Plant Disease, 101 (6), 1061. DOI : 10.1094/PDIS-01-17-0012-PDN

Candresse, T., Marais, A., Theil, S., Faure, C., Lacombe, T., Boursiquot, J.-M. (2017). Complete Nucleotide Sequence of an Isolate of Grapevine Satellite Virus and Evidence for the Presence of Multimeric Forms in an Infected Grapevine. Genome Announcements, 5 (16), e01703-16. DOI : 10.1128/genomeA.01703-16

Candresse, T., Faure, C., Theil, S., Spilmont, A.-S., Marais, A. (2017). First report of Grapevine hammerhead viroid-like RNA infecting grapevine (Vitis vinifera L.) in France. Plant Disease, First Look. DOI : 10.1094/PDIS-05-17-0716-PDN

Gao, R., Xu, Y., Candresse, T., He, Z., Li, S., Ma, Y., Lu, M (2017). Further insight into genetic variation and haplotype diversity of Cherry virus A from China. Plos One, 12 (10), e0186273. DOI : 10.1371/journal.pone.0186273

Grisoni, M., Marais, A., Filloux, D., Saison, A., Faure, C., Julian, C., Theil, S., Contreras, S., Teycheney, P.-Y., Roumagnac, P., Candresse, T. (2017). Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Archives of Virology, 162, 3855-3861. DOI : 10.1007/s00705-017-3540-9

Hily, JM., Demanèche, S., Poulicard, N., Tannières, M., Djennane, S., Beuve, M., Vigne, E., Demangeat, G., Komar, V., Gertz, C., Marmonier, A., Hemmer, C., Vigneron, S., Marais, A., Candresse, T., Simonet, P., Lemaire, O (2017). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal. DOI : 10.1111/pbi.12761

Jiang, J., Zhang, Z., Hu, B., Hu, G., Wang, H., Faure, C., Marais, A., Candresse, T., Li, S (2017). Identification of a viroid-like RNA in a lychee Transcriptome Shotgun Assembly. Virus Research, 240, 1-7. DOI : 10.1016/j.virusres.2017.07.012

Le Signor, C., Aime, D., Bordat, A., Belghazi, M., Labas, V., Gouzy, J., Young, N. D., Prosperi, J.-M., Leprince, O., Thompson, R., Buitink, J., Burstin, J., Gallardo-Guerrero, K. (2017). Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds. New Phytologist, 214,1597-1613. DOI : 10.1111/nph.14500

Marais, A., Nivault, A., Faure, C., Theil, S., Comont, G., Candresse, T., Corio-Costet, MF (2017). Determination of the complete genomic sequence of Neofusicoccum luteum mitovirus 1 (NLMV1), a novel mitovirus associated with a phytopathogenic Botryosphaeriaceae. Archives of Virology, 162 (8), 2477-2480. DOI : 10.1007/s00705-017-3338-9

Massart, S., Candresse, T., Gil, J., Lacomme, C., Predajna, L., Ravnikar, M., Reynard, J.S., Rumbou, A., Saldarelli, P., Škorić, D., Vainio, E.J., Valkonen, J.P.T., Vanderschuren, H., Varveri, C., Wetzel, T. (2017). A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies. Front. Microbiol. 8, 45. doi: 10.3389/fmicb.2017.00045

Nicaise, V., Candresse, T. (2017). Plum pox virus capsid protein suppresses plant pamp-triggered immunity. Molecular Plant Pathology, 18 (6), 878-886. DOI : 10.1111/mpp.12447

Patel, A. N., Anne, A., Chovin, A., Demaille, C., Grelet, E., Michon, T., Taofifenua, C. (2017). Scaffolding of Enzymes on Virus Nanoarrays: Effects of Confinement and Virus Organization on Biocatalysis. Small (Weinheim an der Bergstrasse, Germany), 1603163. DOI : 10.1002/smll.201603163

Predajňa, L., Sihelská, N., Benediková, D., Šoltys, K., Candresse, T., Glasa, M. (2017). Molecular characterization of Prune dwarf virus cherry isolates from Slovakia shows their substantial variability and reveals recombination events in PDV RNA3. European Journal of Plant Pathology, 147 (4), 877-885. DOI : 10.1007/s10658-016-1055-y

Rolland, M., Villemot, J., Marais, A., Theil, S., Faure, C., Cadot, V., Valade, R., Vitry, C., Rabenstein, F., Candresse, T. (2017). Classical and next generation sequencing approaches unravel Bymovirus diversity in barley crops in France. PloS one, 12 (11), e0188495. DOI : 10.1371/journal.pone.0188495

Rousseau, E., Moury, B., Mailleret, Senoussi, R., Palloix, A., Simon, V., Valiere, S., Grognard, Fabre, F. (2017). Estimating virus effective population size and selection without neutral markers. Plos Pathogens, 13 (11), e1006702. DOI : 10.1371/journal.ppat.1006702

Rozado-Aguirre, Z., Marais, A., Svanella-Dumas, L., Faure, C., Latour, F., Villeneuve, F., Dickinson, M., Fox, A., Boonham, N., Candresse, T. (2017). First Report of Carrot torradovirus 1 (CaTV1), a Member of the Torradovirus Genus, Infecting Carrots in France. Plant Disease, 101 (7), 1333. DOI : 10.1094/PDIS-01-17-0095-PDN

Rubio, M., Martínez-Gómez, P., Marais, A., Sánchez-Navarro, J., Pallás, V., Candresse, T. (2017). Recent advances and prospects in Prunus virology. Annals of Applied Biology, 171, 125-138. DOI : 10.1111/aab.12371

Šafářová, D., Faure, C., Candresse, T., Navrátil, M., Nečas, T., Marais, A. (2017). First Report of Little cherry virus 1 Infecting Apricot in the Czech Republic. Plant Disease, 101 (5), 845. DOI : 10.1094/PDIS-09-16-1289-PDN

Safarova, Faure, C., Marais, A., Sucha, Paprstein, Navratil, Candresse, T. (2017). First report of Prunus virus F infecting sour cherry in the Czech Republic. Plant Disease. DOI : 10.1094/PDIS-04-17-0469-PDN

Sánchez, E., Tricon, D., Mora, Quiroz, Decroocq, V., Prieto (2017). A fast and efficient protocol for small RNA extraction in Japanese plum and other Prunus species. Electronic Journal of Biotechnology, 30, 103-109. DOI : 10.1016/j.ejbt.2017.10.006

Sofer, L., Cabanillas, DG., Gayral, M., Téplier, R., Pouzoulet, J., Ducousso, M., Dufin, L., Bréhélin, C., Ziegler-Graff, V., Brault, V., Revers, F (2017). Identification of host factors potentially involved in RTM-mediated resistance during potyvirus long distance movement. Archives of virology, 162, 1855-1865. DOI : 10.1007/s00705-017-3292-6

Sorrentino, R., Marais, A., Faure, C., Theil, S., Alioto, Candresse, T. (2017). First report of Kalanchoe mosaic virus and Kalanchoe latent virus infecting Ghost plant (Graptopetalum paraguayense W.) in Italy. Plant Disease, 101 (8), 1560. DOI : 10.1094/PDIS-03-17-0338-PDN

Tavert-Roudet, G., Anne, A., Barra, A., Chovin, A., Demaille, C., Michon, T. (2017). The potyvirus particle recruits the plant translation initiation factor eIF4E by means of the VPg covalently linked to the viral RNA. Molecular Plant-Microbe Interactions, 30 (9), 754-762. DOI : 10.1094/MPMI-04-17-0091-R

Więsyk, A., Candresse, T., Zagórski-Ostoja, W., Góra-Sochacka, A (2017). Viability and genetic stability of potato spindle tuber viroid mutants with indels in specific loops of the rod-like secondary structure. Virus Research, 240, 94-100. DOI : 10.1016/j.virusres.2017.07.024

2016

Bernardo, P., Muhire, B., François, S., Deshoux, M., Hartnady, P., Farkas, K., Kraberger, S., Filloux, D., Fernandez, E., Galzi, S., Ferdinand, R., Granier, M., Marais, A., Monge Blasco, P., Candresse, T., Escriu, F., Varsani, A., Harkins, G. W., Martin, D. P., Roumagnac, P. (2016). . Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Virology, 493, 142-153. DOI : 10.1016/j.virol.2016.03.016

Besong-Ndika, J., Wahlsten, M., Cardinale, D., Pille, J., Walter, J., Michon, T., Mäkinen, K. (2016). . Toward the Reconstitution of a Two-Enzyme Cascade for Resveratrol Synthesis on Potyvirus Particles. Frontiers in plant science, 7, 89. DOI : 10.3389/fpls.2016.00089

Candresse, T., Marais, A., Sorrentino, R., Faure, C., Theil, S., Cadot, V., Rolland, M., Villemot, J., Rabenstein, F. (2016). . Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing.. Archives of virology, 161 (3), 741-743. DOI : 10.1007/s00705-015-2709-3

Charon, J., Theil, S., Nicaise, V., Michon, T. (2016). . Protein intrinsic disorder within the Potyvirus genus: from proteome-wide analysis to functional annotation. Molecular BioSystems, 12, 634-652. DOI : 10.1039/c5mb00677e

Cirilli, M., Geuna, F., Babini , A.-R., Bozhkova, V., Catalano, L., Cavagna, B., Dallot, S., Decroocq, V., Dondini, L., Foschi, S., Ilardi, V., Liverani, A., Mezzetti, B., Minafra, A., Pancaldi, M., Pandolfini, T., Pascal, T., Savino, V. N., Scorza, R., Verde, I., Bassi, D. (2016). Fighting sharka in peach: current limitations and future perspectives. Frontiers in Plant Science, 7, 1290. DOI : 10.3389/fpls.2016.01290

Decroocq, S., Cornille, A., Tricon, D., Babayeva, S., Chague, A., Eyquard, JP., Karychev, R., Dolgikh, S., Kostritsyna, T., Liu, S., Liu, W., Geng, W., Liao, K., Asma, BM., Akparov, Z., Giraud, T., Decroocq, V (2016). New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance. Molecular ecology, 25 (19), 4712-29. DOI : 10.1111/mec.13772

Duff-Farrier, C. R. A., Candresse, T., Bailey, A. M., Boonham, N., Foster, G. D. (2016). . Evidence for different, host-dependent functioning of Rx against both wild-type and recombinant Pepino mosaic virus. Molecular plant pathology, 17 (1), 120-126. DOI : 10.1111/mpp.12256

Hadidi, A., Flores, R., Candresse, T., Barba, M. (2016). Next-Generation Sequencing and Genome Editing in Plant Virology. Frontiers in Microbiology, 7, 1325. DOI : 10.3389/fmicb.2016.01325

Lebaron, C., Rosado, A., Sauvage, C., Gauffier, C., German-Retana, S., Moury, B., Gallois, JL (2016). A new eIF4E1 allele characterized by RNAseq data mining is associated with resistance to PVY in tomato albeit with a low durability. The Journal of General Virology, 97, 3063-3072. DOI : 10.1099/jgv.0.000609

Marais, A., Faure, C., Candresse, T. (2016).  New Insights into Asian Prunus Viruses in the Light of NGS-Based Full Genome Sequencing. PloS one, 11 (1), e0146420. DOI : 10.1371/journal.pone.0146420

Marais, A., Faure, C., Theil, S., Svanella-Dumas, L., Brans, Y., Maurice, I., Blin, V., Candresse, T. (2016). First Report of Little cherry virus 1 on Plum in France. Plant Disease, 100 (12), 2544. DOI : 10.1094/PDIS-06-16-0915-PDN

Mariette, S., Wong Jun Tai, F., Roch, G., Barre, A., Chague, A., Decroocq, S., Groppi, A., Laizet, Y., Lambert, P., Tricon, D., Nikolski, M., Audergon, J.-M., Abbott, A. G., Decroocq, V. (2016). . Genome-wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca). New Phytologist, 209 (2), 773-784. DOI : 10.1111/nph.13627

Miguel, S., Biteau, F., Mignard, B., Marais, A., Candresse, T., Theil, S., Bourgaud, F., Hehn, A. (2016). Beet western yellows virus infects the carnivorous plant Nepenthes mirabilis. Archives of virology, 161, 2273-2278. DOI : 10.1007/s00705-016-2891-y

2015

Besong-Ndika, J., Ivanov, K. I., Hafrèn, A., Michon, T., Mäkinen, K. (2015). Cotranslational coat protein-mediated inhibition of potyviral RNA translation. Journal of virology, 89 (8), 4237-48. DOI : 10.1128/JVI.02915-14

Beuve, M., Candresse, T., Tannieres, M., Lemaire, O. (2015). First Report of Grapevine Pinot gris virus (GPGV) in grapevine in France. Plant Disease, 99 (2), 293. DOI : 10.1094/PDIS-10-14-1008-PDN

Bordat, A., Houvenaghel, M.-C., German-Retana, S. (2015). Gibson assembly : an easy way to clone potyviral full-length infectious cDNA clones ex pressing an ectopic VPg. Virology Journal, 12, 89. DOI : 10.1186/s12985-015-0315-3

Cayla, T., Batailler, B., LE HIR, R., Revers, F., Anstead, J. A., Thompson, G. A., Grandjean, O., Dinant, S. (2015). Live imaging of companion cells and sieve elements in Arabidopsis leaves. PloS one, 10 (2), e0118122. DOI : 10.1371/journal.pone.0118122

Julio, E., Cotucheau, J., Decorps, C., Volpatti, R., Sentenac, C., Candresse, T., Dorlhac de Borne, F. (2015). A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Molecular Biology Reporter, 33 (3), 609-623. DOI : 10.1007/s11105-014-0775-4

Maliogka, VI., Olmos, A., Pappi, PG., Lotos, L., Efthimiou, K., Grammatikaki, G., Candresse, T., Katis, NI., Avgelis, AD (2015). A novel grapevine badnavirus is associated with the Roditis leaf discoloration disease. Virus research, 203, 47-55. DOI : 10.1016/j.virusres.2015.03.003

Marais, A., Faure, C., Mustafayev, E., Barone, M., Alioto, D., Candresse, T. (2015). Characterization by Deep Sequencing of Prunus virus T, a Novel Tepovirus Infecting Prunus Species. Phytopathology, 105 (1), 135-140. DOI : 10.1094/PHYTO-04-14-0125-R

Minutillo, SA., Marais, A., Mascia, T., Faure, C., Svanella-Dumas, L., Theil, S., Payet, A., Perennec, S., Schoen, L., Gallitelli, D., Candresse, T. (2015). Complete nucleotide sequence of Artichoke latent virus shows it to be a member of the genus Macluravirus in the family Potyviridae. Phytopathology, 105 (8), 1155-60. DOI : 10.1094/PHYTO-01-15-0010-R

Nault, L., Taofifenua, C., Anne, A., Chovin, A., Demaille, C., Besong-Ndika, J., Cardinale, D., Carette, N., Michon, T. and , Walter, J. (2015). Electrochemical Atomic Force Microscopy Imaging of Redox-Immunomarked Proteins on Native Potyviruses: From Subparticle to Single-Protein Resolution. ACS Nano, 9 (5) : 4911-4924. doi:10.1021/acsnano.5b00952

Nicaise, V. (2015) . Lost in Translation: An Antiviral Plant Defense Mechanism Revealed. Cell Host & Microbe, 17 (4), 417-419. DOI : 10.1016/j.chom.2015.03.009

Poque, A., Pagny, G., Ouibrahim, L., Chague, A., Eyquard, J.-P., Caballero, M., Candresse, T., Caranta, C., Mariette, S., Decroocq, V. (2015). . Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana. BMC Plant Biology, 15 (159), 1-14. DOI : 10.1186/s12870-015-0559-5

Rubio, M., Rodríguez-Moreno, L., Ballester, A. R., Castro de Moura, M., Bonghi, C., Candresse, T., Martínez-Gómez, P. (2015). Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq. Molecular plant pathology, 16 (2), 164-176. DOI : 10.1111/mpp.12169

Soueidan, H., Schmitt, L.-A., Candresse, T., Nikolski, M. (2015). Finding and identifying the viral needle in the metagenomic haystack: trends and challenges. Frontiers in microbiology, 5, 1-7. DOI : 10.3389/fmicb.2014.00739

2014

Candresse, T.; Filloux, D.; Muhire, B.; Jullian, C.; Galzi, S.; Fort, G.; Bernardo, P.; Daugrois, J.-H.; Fernandez, E.; Martin, D. P.; Varsani, A.; Roumagnac, P. Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context. PloS one, 2014, 9 (7). DOI : 10.1371/journal.pone.0102945

Choulet, F.; Alberti, A.; Theil, S.; Glover, N. M.; Barbe, V.; Daron, J.; Pingault, L.; Sourdille, P.; Couloux, A.; Paux, E.; Leroy, P.; Mangenot, S.; Guilhot, N.; Le Gouis, J.; Balfourier, F.; Alaux, M.; Jamilloux, V.; Julie, P.; Durand, C.; Bellec, A.; Gaspin, C.; Šafář, J.; Doležel, J.; Rogers, J.; Vandepoele, K.; Aury, J.-M.; Mayer, K.; Berges, H.; Quesneville, H.; Wincker, P.; Feuillet, C. Structural and Functional Partitioning of Bread Wheat Chromosome 3B. Sciences, 2014, 345 (6194 ). DOI : 10.1126/science.1249721

Cosson, P.; Decroocq, V.; Revers, F. Development and characterization of 96 microsatellite markers suitable for QTL mapping and accession control in an Arabidopsis core collection. Plant methods, 2014, 10 (1), 2 : 1-6. DOI : 10.1186/1746-4811-10-2

Decroocq, S.; Chague, A.; Lambert, P.; Roch, G.; Audergon, J. M.; Geuna, F.; Chiozzotto, R.; Bassi, D.; Dondini, L.; Tartarini, S.; Salava, J.; Krska, B.; Palmisano, F.; Karayiannis, I.; Decroocq, V. Selecting with markers linked to the PPVres major QTL is not sufficient to predict resistance to Plum Pox Virus (PPV) in apricot. Tree Genetics and Genomes, 2014, 10 (5), 1161-1170. DOI : 10.1007/s11295-014-0750-0

García, J. A.; Glasa, M.; Cambra, M.; Candresse, T. Plum Pox Virus and Sharka: A Model Potyvirus and a Major Disease. Molecular plant pathology, 2014, 15 (3), 226-241. DOI : 10.1111/mpp.12083

Glasa, M.; Predajňa, L.; Komínek, P.; Nagyová, A.; Candresse, T.; Olmos, A. Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines. Archives of Virology, 2014, 159 (8), 2103-2107. DOI : 10.1007/s00705-014-2031-5

Julio, E.; Cotucheau, J.; Decorps, C.; Volpatti, R.; Sentenac, C.; Candresse, T.; Dorlhac de Borne, F. A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Molecular Biology Reporter, 2014, Online first. DOI : 10.1007/s11105-014-0775-4

Katsiani, A.T.; Maliogka, V.I.; Candresse, T.; Katis, N.I.  Host range studies, genetic diversity and evolutionary relationships of ACLSV isolates from ornamental, wild and cultivated rosaceous species. Plant Pathology, 2014, 63 (1), 63-71. DOI: 10.1111/ppa.12058

Mambole, I. A.; Bonheur, L.; Svanella-Dumas, L.; Filloux, D.; Gomez, R.-M.; Faure, C.; Lange, D.; Anzala, F.; Pavis, C.; Marais, A.; Roumagnac, P.; Candresse, T.; Teycheney, P.-Y. Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams. Archives of Virology, 2014, Online first. DOI : 10.1007/s00705-014-2211-3

Marais, A.; Faure, C.; Couture, C.; Bergey, B.; Gentit, P.; Candresse, T. Characterization by deep sequencing of divergent Plum bark necrosis stem pitting-associated virus isolates and development of a broad spectrum PBNSPaV detection assay. Phytopathology, 2014, 104 (6), 660-666. DOI : 10.1094/PHYTO-08-13-0229-R

Massart, S.; Olmos, A.; Jijakli, H.; Candresse, T. Current impact and future directions of high throughput sequencing in plant virus diagnostics. Virus research, 2014, 188, 90-96. DOI : 10.1016/j.virusres.2014.03.029

Nicaise, V. Crop immunity against viruses: outcomes and future challenges. Frontiers in plant science, 2014, 5, 660 : 1-18. DOI : 10.3389/fpls.2014.00660

Ouibrahim, L.; Mazier, M.; Estevan, J.; Pagny, G.; Decroocq, V.; Desbiez, C.; Moretti, A.; Gallois, J.-L.; Caranta, C. Cloning of the Arabidopsis rwm1 gene for resistance to Watermelon mosaic virus points to a new function for natural virus resistance genes. Plant Journal, 2014, 79 (5), 705-716. DOI : 10.1111/tpj.12586

Perraki, A.; Binaghi, M.; Mecchia, M. A.; Gronnier, J.; German-Retana, S.; Mongrand, S.; Bayer, E.; Zelada, A. M.; Germain, V. StRemorin1.3 hampers Potato virus X TGBp1 ability to increase plasmodesmata permeability, but does not interfere with its silencing suppressor activity. FEBS Letters, 2014, 588 (9), 1699 - 1705. DOI : 10.1016/j.febslet.2014.03.014

Ravelonandro, M.; Scorza, R.; Hily, J.-M.; Briard, P. The efficiency of RNA interference for conferring stable resistance to plum pox virus. Plant Cell Tissue and Organ Culture, 2014, 118 (2), 347-356. DOI : 10.1007/s11240-014-0487-3

Rodamilans, B.; San León, D.; Mühlberger, L.; Candresse, T.; Neumüller, M.; Oliveros, J. C.; García, J. A. Transcriptomic Analysis of Prunus domestica Undergoing Hypersensitive Response to Plum Pox Virus Infection. PloS one, 9 (6), e100477. DOI : 10.1371/journal.pone.0100477

Sorel, M.; Garcia, J. A.; German-Retana, S. The Potyviridae Cylindrical Inclusion helicase: a key multipartner and multifunctional protein. Molecular plant-microbe interactions : MPMI, 2014, 27 (3), 215-216. DOI : 10.1094/MPMI-11-13-0333-CR

Sorel, M.; Svanella-Dumas, L.; Candresse, T.; Acelin, G.; Pitarch, A.; Houvenaghel, M.-C.; German-Retana, S. Key Mutations in the Cylindrical Inclusion Involved in Lettuce mosaic virus Adaptation to eIF4E-Mediated Resistance in Lettuce. Molecular Plant-Microbe Interactions : MPMI, 2014, 27 (9), 1014-24. DOI : 10.1094/MPMI-04-14-0111-R

Svanella-Dumas, L.; Verdin, E.; Faure, C.; German-Retana, S.; Gognalons, P.; Danet, J.-L.; Marais, A.; Candresse, T. Adaptation of Lettuce mosaic virus to Catharanthus roseus involves mutations in the central domain of the VPg. Molecular plant-microbe interactions : MPMI, 2014, 27 (5), 491-497. DOI : 10.1094/MPMI-10-13-0320-R

Vayssier-Taussat, M.; Albina, E.; Citti, C.; Cosson, J.-F.; Jacques, M. A.; Lebrun, M.-H.; Le Loir, Y.; Ogliastro, M. H.; Petit, M. A.; Roumagnac, P.; Candresse, T. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Frontiers in Cellular and Infection Microbiology, 2014, 4, article 29. DOI : 10.3389/fcimb.2014.00029

Zhang, S.; Ravelonandro, M.; Russell, P.; McOwen, N.; Briard, P.; Bohannon, S.; Vrient, A. Rapid diagnostic detection of plum pox virus in Prunus plants by isothermal AmplifyRP(®) using reverse transcription-recombinase polymerase amplification. Journal of Virological Methods, 2014, 207, 114-120. DOI : 10.1016/j.jviromet.2014.06.026

2013

Arous, S.; Marais, A.; Faure, C.; Svanella-Dumas, L.; Candresse, T. Partial sequence of a new Partitivirus-infecting Podosphaera tridactyla, the Prunus powdery mildew agent. Virus Genes, 2013, 46(1) : 199-200. DOI:10.1007/s11262-012-0840-8

Candresse, T.; Marais, A.; Faure, C. First report of Southern tomato virus on tomatoes in Southwest France. Plant Disease, 2013, 97 (8), 1124. DOI : 10.1094/PDIS-01-13-0017-PDN

Candresse, T.; Marais, A.; Faure, C.; Gentit, P. Association of Little cherry virus 1 (LChV1) with the Shirofugen stunt disease and characterization of the genome of a divergent LChV1 isolate. Phytopathology, 2013, 103(3) : 293-8. DOI:10.1094/PHYTO-10-12-0275-R

Glasa, M.; Prikhodko, Y.; Predajňa, L.; Nagyová, A.; Shneyder, Y.; Zhivaeva, T.; Šubr, Z.; Cambra, M.; Candresse, T.  Characterization of sour cherry isolates of Plum pox virus from the Volga basin in Russia reveals a new cherry strain of the virus. Phytopathology, 2013, 103 (9), 972-9. DOI :  10.1094/PHYTO-11-12-0285-R

Hipper, C.; Brault, V.; Ziegler-Graff, V.; Revers, F. Viral and cellular factors involved in phloem transport of plant viruses. Frontiers in Plant Science, 2013, 4 : 1-24. DOI:10.3389/fpls.2013.00154

Marais, A.; Faure, C.; Couture, C.; Bergey, B.; Gentit, P.; Candresse, T. Characterization by deep sequencing of divergent Plum bark necrosis stem pitting-associated virus isolates and development of a broad spectrum PBNSPaV detection assay. Phytopathology, 2013. DOI : 10.1094/PHYTO-08-13-0229-R

Mustafayev, E.; Svanella-Dumas, L.; Kumari, S.; Akparov, Z.; Candresse, T. First report of Barley yellow dwarf virus and Cereal yellow dwarf virus affecting cereal crops in Azerbaijan. Plant Disease, 2013, 97 (6) : 849. DOI:10.1094/PDIS-07-12-0656-PDN

Pille, J.; Cardinale, D.; Carette, N.; Di Primo, C.; Besong-Ndika, J.; Walter, J.; Lecoq, H.; van Eldijk, M. B.; Smits, F. C. M.; Schoffelen, S.; van Hest, J. C. M.; Mäkinen, K.; Michon, T. General strategy for ordered noncovalent protein assembly on well-defined nanoscaffolds. Biomacromolecules, 2013, 14 (12), 4351-9. DOI : 10.1021/bm401291u

Ravelonandro, M.; Scorza, R.; Polak, J.; Callahan, A.; Krska, B.; Kundu, J.; Briard, P. "HoneySweet" Plum—A Valuable Genetically Engineered Fruit-Tree Cultivar. Food and Nutrition Sciences, 2013, 4, 45-49. DOI : 10.4236/fns.2013.46A005

Safarova, D.; Navratil, M.; Paprstein, T.; Candresse, T.; Marais, A. Cherry virus A infecting cherries and plums in the Czech Republic – Short communication . Horticultural Science, 2013, 40(1) : 37-39.

Svanella-Dumas, L.; Candresse, T.; Hullé, M.; Marais, A.  Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic Kerguelen Islands and characterization of two new Luteovirus species. Plos One, 2013, 8 (6), e67231, 1-13. DOI : 10.1371/journal.pone.0067231

2012

Arunyawat, U.; Capdeville, G.; Decroocq, V.; Mariette, S. Linkage disequilibrium in French wild cherry germplasm and worldwide sweet cherry germplasm. Tree Genetics and Genomes. 2012, 8 : 737-755. DOI: 10.1007/s11295-011-0460-9

Cosson, P.; Schurdi-Levraud, V.; Le, QH.; Sicard, O.; Caballero, M.; Roux, F.; Le Gall, O.; Candresse, T.; Revers, F. The RTM Resistance to Potyviruses in Arabidopsis thaliana: Natural Variation of the RTM Genes and Evidence for the Implication of Additional Genes. PLoS ONE. 2012, 7(6) : e39169. DOI: 10.1371/journal.pone.0039169

Marais, A.; Svanella-Dumas, L.; Barone, M.; Gentit, P.; Faure, C.; Charlot, G.; Ragozzino, A.; Candresse, T. Development of a polyvalent RT-PCR detection assay covering the genetic diversity of Cherry capillovirus A. Plant Pathology. 2012, 61 (1) : 195-204.

Mathioudakis, M.M. ; Candresse, T. ; Barone, M. ; Ragozzino, A. ; Katis, N.I. Cydonia japonica, Pyrus calleryana and P. amygdaliformis: three new ornamental or wild hosts of Apple stem pitting virus.Virus Genes. 2012, 44 (2) : 319-322.

Pagny, G.; Paulstephenraj, P. S.; Poque, S.; Sicard, O.; Cosson, P.; Eyquard, J.-P.; Caballero, M.; Chague, A.; Gourdon, G.; Negrel, L.; Candresse, T.; Mariette, S.; Decroocq, V. Family-based linkage and association mapping reveals novel genes affecting Plum pox virusinfection in Arabidopsis thaliana. New Phytologist. 2012, 196 : 873–886. DOI:10.1111/j.1469-8137.2012.04289.x

Perraki, A.;  Cacas, J. L.;  Crowet, J. M.;  Lins, L.;  Castroviejo, M.; German-Retana, S.; Mongrand, S.; Raffaele, S. Plasma membrane localization of solanum tuberosum remorin from group 1, homolog 3 is mediated by conformational changes in a novel C-terminal anchor and required for the restriction of potato virus X movement]. Plant Physiol. 2012, 160 : 624-37. DOI: 10.1104/pp.112.200519

Predajňa, L.; Šubr, Z.; Candresse, T.; Glasa, M. Evaluation of the genetic diversity of Plum pox virus in a single plum tree. Virus research. 2012, 167 (1), 112-7. DOI : 10.1016/j.virusres.2012.04.002

Safarova, D.; Navratil, M.; Faure, C.; Candresse, T.; Marais, A. First Report of Apricot pseudo-chlorotic leaf spot virus Infecting Plum (Prunus domestica) in the Czech Republic. Plant Disease. 2012, 96 (3) : 461. DOI: 10.1094/PDIS-10-11-0844

Sturbois, B.; Dubrana-Ourabah, M.P.; Gombert, J.; lasseur, B.; Macquet, A.; Faure, C.; Bendahmane, A.; Baures, I.; Candresse, T. Identification and characterization of tomato mutants affected in the Rx-mediated resistance to PVX isolates. Molecular Plant Microbe Interactions. 2012, 25 (3) : 341-354. DOI: 10.1094/MPMI-07-11-0181

Tavert-Roudet, G.; Abdul Razzak, A.; Doublet, B.; Walter, J.; Delaunay, T.; Michon, T.; Le Gall, O.; Candresse, T. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. Journal of General Virology. 2012, 93 (1) : 184-193. DOI: 10.1099/vir.0.035881-0

Books or book chapters

2017

Candresse, T., Verhoeven, J. T., Stancanelli, G., Hammond, R. W., Winter, S. (2017). Other Pospiviroids Infecting Solanaceous Plants. In: Ahmed Hadidi, Ricardo Flores, John W. Randles, Peter Palukaitis (Eds.), dir., Viroids and Satellites (p. 159-168). Elsevier, Academic Press. DOI : 10.1016/B978-0-12-801498-1.00015-2

Delano, J., Cieslinska, M., Pallas, V., Flores, R., Candresse, T., Jelkmann, W. (2017). Viruses, Viroids, Phytoplasmas and Genetic Disorders of Cherry. In: José Quero-Garcia, Amy Lezzoni, Joanna Pulawska, Gregory Lang (Eds.), dir., Cherries: Botany, Production and Uses (p. 386-419). Boston, USA : CABI.

2015

Revers, F.; García, J. A. Molecular biology of potyviruses. In: Karl Maramorosch, Thomas C. Mettenleiter, dir. Advances in virus research, 2015, 92, p. 101-99. Elsevier - Academic Press. DOI : 10.1016/bs.aivir.2014.11.006

2014

Revers, F.; Nicaise, V. Plant resistance to infection by viruses. In: Encyclopedia of Life Sciences. USA : John Wiley and Sons Ltd. 2014. DOI : 10.1002/9780470015902.a0000757.pub3

Rossi, V.; Candresse, T.; Jeger, M.; Manceau, C.; Urek, G.; Stancanelli, G. Diagnosis of plant pathogens and implications for plant health regulation: the European Food Safety Authority perspective. In: Maria Lodovica Gullino, Peter J M Bonants, dir., Detection and diagnostics of plant pathogens. 2014. Berlin Heidelberg, DEU : Springer.

2013

Polak, J.; Jarosova, J.; Kumar, J.; Krska, B.; Gogolkova, K.; Sochor, J.; Kizek, R.; Scorza, R.; Ravelonandro, M. The evaluation of virus symptoms and fruit quality of GMO, PPV-Resistant P. domestica 'HoneySweet' grown in the open field under a high and permanent infection pressure of PPV, ACLSV, and PDV. In: Proceedings of the second Genetically Modified Organisms in horticulture symposium (p. 65-70). Acta Horticulturae, 2013, 974. Communication présentée à 2. Genetically Modified Organisms in Horticulture Symposium, White River, ZAF (2011-09-11 - 2011-09-15). Leuven, BEL : ISHS.

Ravelonandro, M.; Briard, P.; Hily, J. M. RNAi to silence the Plum pox virus genome. Acta Horticulturae, 2013, 974. Communication présentée à 2. Genetically Modified Organisms in Horticulture Symposium, White River, ZAF (2011-09-11 - 2011-09-15). Leuven, BEL : International Society for Horticultural Science.

Scorza, R.; Callahan, A.; Dardick, C.; Ravelonandro, M.; Cambra, M.; Zagrai, I.; Polak, J.; Malinowski, T. 'HoneySweet' - a transgenic Plum Pox Virus resistant plum - from laboratory and experimental field plots, to regulatory approval. In: Proceedings of the second Genetically Modified Organisms in horticulture symposium (p. 57-63). Acta Horticulturae, 2013, 974. Communication présentée à 2. Genetically Modified Organisms in Horticulture Symposium, White River, ZAF (2011-09-11 - 2011-09-15). Leuven, BEL : ISHS.

Scorza, R.; Callahan, A.; Dardick, C.; Srinivasan, C.; DeJong, T.; Abbott, A.; Ravelonandro, M. Biotechnological advances in the genetic improvement of Prunus domestica. In: Proceedings of the tenth international symposium on plum and prune genetics, breeding and pomology (p. 111-117). Acta Horticulturae, 2013, 985. Communication présentée à IEEE International Geoscience and Remote Sensing Symposium, Davis, USA (2012-05-20 - 2012-05-26). Leuven, BEL : ISHS

Scorza, R.; Ravelonandro, M.; Braverman, M. Development and regulation of the Plum Pox Virus resistant transgenic plum "Honeysweet". In:Chris A. Wozniak (Director), Alan McHugen (Director) Regulations of agricultural biotechnology : the United States and Canada. Dordrecht: Springer. 2013. 269-280. DOI:10.1007/978-94-007-2156-2

2012

Adams, M.J.; Candresse, T.; Hammond, J.; Kreuze, J.F.; Martelli, G.P.; Namba, S.; Pearson, M.N.; Ryu, K.H. and Vaira, A.M. Alphaflexiviridae. In Virus Taxonomy, Classification and Nomenclature of Viruses, A.M.Q. King, M.J. Adams, E.B. Carstens and Elliot J. Lefkowitz Eds, Elsevier Academic Press, Amsterdam, The Netherlands. 2012. 904-919.

Adams, M.J.; Candresse, T.; Hammond, J.; Kreuze, J.F.; Martelli, G.P.; Namba, S.; Pearson, M.N.; Ryu, K.H.; Saldarelli, P. and Yoshikawa, N. Betaflexiviridae. In Virus Taxonomy, Classification and Nomenclature of Viruses, A.M.Q. King, M.J. Adams, E.B. Carstens and Elliot J. Lefkowitz Eds, Elsevier Academic Press, Amsterdam, The Netherlands. 2012. 920-941.

Chroboczek, J.; Hébrard, E.; Mäkinen, K.; Michon, T.; Rantalainen, K. Intrinsic disorder in genome-linked viral proteins VPgs of potyviruses. In : Vladimir Uversky, Sonia Longhi, Flexible viruses : structural disorder in viral proteins . Chichester, GBR : John Wiley;  2012. 277-311.

Martelli, G.P.; Agranovsky, A.A.; Bar-Joseph, M.; Boscia, D.; Candresse, T.; Coutts, R.H.A.; Dolja, V.V.; Hu, J.S.; Jelkmann, W.; Karasev, A.V.; Martin, R.R.; Minafra, A.; Namba, S; and Vetten, H.J. Closteroviridae. In Virus Taxonomy, Classification and Nomenclature of Viruses, A.M.Q. King, M.J. Adams, E.B. Carstens and Elliot J. Lefkowitz Eds, Elsevier Academic Press, Amsterdam, The Netherlands. 2012. 920-941.

Thesis

Poque, S. Identification de nouveaux mécanismes de résistance au Plum Pox Virus chez Arabidopsis thaliana. Thèse de doctorat, Université Victor Segalen, 2012.

Maud Sorel : Etude du rôle de la protéine CI du LMV dans le mécanisme de contournement de la résistance liée à eIF4E chez la laitue.