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UMR 1332 - Biologie du Fruit et Pathologie

UMR 1332 Biologie du Fruit et Pathologie

Publications récentes de l'équipe MF


Argyris, J. M., Díaz, A., Ruggieri, V., Fernández, M., Jahrmann, T., Gibon, Y., Picó, B., Martín-Hernández, AM., Monforte, A. J., Garcia-Mas, J (2017). QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.). Frontiers in Plant Science, 8, 1679. DOI : 10.3389/fpls.2017.01679

Cañas, RA., Yesbergenova-Cuny, Z., Simons, M., Chardon, F., Armengaud, P., Quilleré, I., Cukier, C., Gibon, Y., Limami, AM., Nicolas, S., Brulé, L., Lea, PJ., Maranas, CD., Hirel, B (2017). Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. The Plant cell, 29 (5), 919-943. DOI : 10.1105/tpc.16.00613

Colombié, S., Beauvoit, B., Nazaret, C., Bénard, C., Vercambre, G., Le Gall, S., Biais, B., Cabasson, C., Maucourt, M., Bernillon, S., Moing, A., Dieuaide-Noubhani, M., Mazat, JP., Gibon, Y (2017). Respiration climacteric in tomato fruits elucidated by constraint-based modelling. The New phytologist, 213 (4), 1726-1739. DOI : 10.1111/nph.14301

Deborde, C., Moing, A., Roch, L., Jacob, D., Rolin, D., Giraudeau, P. (2017). Plant metabolism as studied by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy, 102-103, 61-97. DOI : 10.1016/j.pnmrs.2017.05.001

Gimeno, T. E., Ogée, J., Royles, J., Gibon, Y., West, J. B., Burlett, R., Jones, S. P., Sauze, J., Wohl, S., Benard, C., Genty, B., Wingate, L. (2017). Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light. The New phytologist, 215 (3), 965-976. DOI : 10.1111/nph.14584

Jacob, D., Deborde, C., Lefebvre, M., Maucourt, M., Moing, A. (2017). NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics, 13 (4), 36. DOI : 10.1007/s11306-017-1178-y

Huang, H., Nguyen Thi Thu, T., He, X., Gravot, A., Bernillon, S., Ballini, E., Morel, J.-B. (2017). Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast. Frontiers in Plant Science, 8, 265. DOI : 10.3389/fpls.2017.00265

Luchaire, N., Rienth, M., Romieu, C., Nehe, A., Chatbanyong, R., Houel, C., Ageorges, A., Gibon, Y., Turc, O., Muller, B., Torregrosa, L., Pellegrino, A. (2017). Microvine: A New Model to Study Grapevine Growth and Developmental Patterns and their Responses to Elevated Temperature. American Journal of Enology and Viticulture, ajev.2017.16066. DOI : 10.5344/ajev.2017.16066

Martineau, E., Domec, J.-C., Bosc, A., Dannoura, M., Gibon, Y., Benard, C., Jordan-Meille, L. (2017). The role of potassium on maize leaf carbon exportation under drought condition. Acta Physiologiae Plantarum, 39 (10), 219. DOI : 10.1007/s11738-017-2515-5

Musseau, C., Just, D., Jorly, J., Gevaudant, F., Moing, A., Chevalier, C., Lemaire-Chamley, M., Rothan, C., Fernandez, L. (2017). Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. Frontiers in Plant Science, 8. DOI : 10.3389/fpls.2017.00988

Omena-Garcia, R. P., Araújo, WL., Gibon, Y., Fernie, A. R., Nunes-Nesi, A (2017). Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants. Methods in Molecular Biology, 1670, 167-182. DOI : 10.1007/978-1-4939-7292-0_14

Perrin, F., Dubois-Laurent, C., Gibon, Y., Citerne, S., Huet, S., Suel, A., Le Clerc, V., Briard, Hamama, Peltier, Gagné, Geoffriau (2017). Combined Alternaria dauci infection and water stresses impact carotenoid content of carrot leaves and roots. Environmental and Experimental Botany, 143, 125-134. DOI : 10.1016/j.envexpbot.2017.09.004

Salon, C., Avice, JC., Colombie, S., Dieuaide-Noubhani, M., Gallardo, K., Jeudy, C., Ourry, A., Prudent, M., Voisin, AS., Rolin, D (2017). Fluxomics links cellular functional analyses to whole-plant phenotyping. Journal of experimental botany, 68 (9), 2083-2098. DOI : 10.1093/jxb/erx126

Schober, D., Jacob, D., Wilson, M., Cruz, JA., Marcu, A., Grant, JR., Moing, A., Deborde, C., de Figueiredo, L. F., Haug, K., Rocca-Serra, P., Easton, J. M., Ebbels, T. M. D., Hao, J., Ludwig, C., Günther, U. L., Rosato, A., Klein, M. S., Lewis, I., Luchinat, C., Jones, A. R., Grauslys, A., Larralde, M., Yokochi, M., Kobayashi, N., Porzel, A., Griffin, J., Viant, M. R., Wishart, DS., Steinbeck, C., Salek, RM., Neumann, S (2017). nmrML: a community supported open data standard for the description, storage, and exchange of NMR data. Analytical chemistry, Online first. DOI : 10.1021/acs.analchem.7b02795


Antoine, S., Pailly, O., Gibon, Y., Luro, F., Santini, J., Giannettini, J., Berti, L. (2016). Short and long term effects of carbohydrate limitation on sugar and organic acid accumulation during mandarin fruit growth. Journal of the science of food and agriculture, 96 (11), 3906-3914. DOI : 10.1002/jsfa.7594

Antoine S, Pailly O, Santini J, Giannettini J, Gibon Y, Luro F & Berti L (2016) Contrasted responses to carbohydrate limitation in mandarin fruit during development. Journal of the Science of Food and Agriculture, in press.

Benard, C., Gibon, Y. (2016). Measurement of Enzyme Activities and Optimization of Continuous and Discontinuous Assays. In: Current Protocols in Plant Biology (p. 247-262). New-York, USA : John Wiley and Sons Inc. DOI : 10.1002/cppb.20003

Berthelot, K., Estevez, Y., Quiliano, M., Baldera-Aguayo, P. A., Zimic, M., Pribat, A., Bakleh, M.-E., Teyssier, E., Gallusci, P., Gardrat, C., Lecomte, S., Peruch, F. (2016). HbIDI, SlIDI and EcIDI: A comparative study of isopentenyl diphosphate isomerase activity and structure. Biochimie, 127, 133-43. DOI : 10.1016/j.biochi.2016.05.005

Bonnot, C., Pinson, B., Clément, M., Bernillon, S., Chiarenza, S., Kanno, S., Kobayashi, N., Delannoy, E., Nakanishi, T. M., Nussaume, L., Desnos, T. (2016). . A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytologist, 209 (1), 161-176. DOI : 10.1111/nph.13591

Bornet, A., Maucourt, M., Deborde, C., Jacob, D., Milani, J., Vuichoud, B., Ji, X., Dumez, J.-N., Moing, A., Bodenhausen, G., Jannin, S., Giraudeau, P. (2016). Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics. Analytical chemistry, 88 (12), 6179-83. DOI : 10.1021/acs.analchem.6b01094

Botton, A., Rasori, A., Ziliotto, F., Moing, A., Maucourt, M., Bernillon, S., Deborde, C., Petterle, A., Varotto, S., Bonghi, C. (2016). . The peach HECATE3-like gene FLESHY plays a double role during fruit development. Plant Molecular Biology, 91 (1-2), 97-114. DOI : 10.1007/s11103-016-0445-z

Chaher, N., Krisa, S., Delaunay, J.-C., Bernillon, S., Pedrot, E., Mérillon, J.-M., Atmani, D., Richard, T. (2016). Unusual compounds from Galium mollugo and their inhibitory activities against ROS generation in human fibroblasts. Journal of pharmaceutical and biomedical analysis, 117, 79-84. DOI : 10.1016/j.jpba.2015.07.027

Fernandez, O., Urrutia, M., Bernillon, S., Giauffret, C., Tardieu, F., Le Gouis, J., Langlade, N., Charcosset, A., Moing, A., Gibon, Y. (2016). Fortune telling: metabolic markers of plant performance. Metabolomics, 12 (10), 14 p. DOI : 10.1007/s11306-016-1099-1

Oury, V., Caldeira, C. F., Prodhomme, D., Pichon, J.-P., Gibon, Y., Tardieu, F., Turc, O. (2016). Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering?. Plant Physiology, 71 (2), 997-1008. DOI : 10.1104/pp.15.01130

Perpiñá, G., Esteras, C., Gibon, Y., Monforte, A. J., Picó, B (2016). A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits. BMC plant biology, 16 (1), 154. DOI : 10.1186/s12870-016-0842-0

Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V. (2016). Bread wheat (Triticum aestivum L.) grain protein concentration is related to early post-flowering nitrate uptake under putative control of plant satiety level. Plos One, 11 (2). DOI : 10.1371/journal.pone.0149668

Toubiana, D., Xue, W., Zhang, N., Kremling, K., Gur, A., Pilosof, S., Gibon, Y., Stitt, M., Buckler, E. S., Fernie, A. R., Fait, A. (2016). Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in plant science, 7, 1022. DOI : 10.3389/fpls.2016.01022


Baldacci-Cresp, F., Maucourt, M., Deborde, C., Pierre, O., Moing, A., Brouquisse, R., Favery, B., Frendo, P. (2015). Maturation of nematode-induced galls in Medicago truncatula is related to water status and primary metabolism modifications. Plant science : an international journal of experimental plant biology, 232, 77-85. DOI : 10.1016/j.plantsci.2014.12.019

Bénard, C., Bernillon, S., Biais, B., Osorio, S., Maucourt, M., Ballias, P., Deborde, C., Colombié, S., Cabasson, C., Jacob, D., Vercambre, G., Gautier, H., Rolin, D., Génard, M., Fernie, AR., Gibon, Y., Moing, A (2015). Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of experimental botany, 66 (11), 3391-404. DOI : 10.1093/jxb/erv151

Chen, W., Kong, J., Qin, C., Yu, S., Tan, J., Chen, YR., Wu, C., Wang, H., Shi, Y., Li, C., Li, B., Zhang, P., Wang, Y., Lai, T., Yu, Z., Zhang, X., Shi, N., Wang, H., Osman, T., Liu, Y., Manning, K., Jackson, S., Rolin, D., Zhong, S., Seymour, GB., Gallusci, P., Hong, Y (2015). Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening. Scientific reports, 5, 9192. DOI : 10.1038/srep09192

Chen, W., Kong, J., Lai, T., Manning, K., Wu, C., Wang, Y., Qin, C., Li, B., Yu, Z., Zhang, X., He, M., Zhang, P., Gu, M., Yang, X., Mahammed, A., Li, C., Osman, T., Shi, N., Wang, H., Jackson, S., Liu, Y., Gallusci, P., Hong, Y (2015). Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening. Scientific reports, 5, 7852. DOI : 10.1038/srep07852

Colombié, S., Nazaret, C., Benard, C., Biais, B., Mengin, V., Sole, M., Fouillen, L., Dieuaide Noubhani, M., Mazat, J.-P., Beauvoit, B., Gibon, Y. (2015). Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit. The Plant journal : for cell and molecular biology, 81 (1), 24-39. DOI : 10.1111/tpj.12685

Dai, Z., Plessis, A., Vincent, J., Duchateau, N., Besson, A., Dardevet, M., Prodhomme, D., Gibon, Y., Hilbert, G., Pailloux, M., Ravel, C., Martre, P (2015). Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.12881

Dumez, J.-N., Milani, J., Vuichoud, B., Bornet, A., Lalande-Martin, J., Tea, I., Yon, M., Maucourt, M., Deborde, C., Moing, A., Frydman, L., Bodenhausen, G., Jannin, S., Giraudeau, P. (2015). . Hyperpolarized NMR of plant and cancer cell extracts at natural abundance. The Analyst, 140 (17), 5860-3. DOI : 10.1039/c5an01203a

Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., Duperier, C., Tremblay-Franco, M., Martin, JF., Jacob, D., Goulitquer, S., Thévenot, EA., Caron, C (2015). Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 31 (9), 1493-5. DOI : 10.1093/bioinformatics/btu813

Grevenstuk, T., Moing, A., Maucourt, M., Deborde, C., Romano, A. (2015). Aluminium stress disrupts metabolic performance of Plantago almogravensis plantlets transiently. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 28 (6), 997-1007. DOI : 10.1007/s10534-015-9884-2

Hédiji, H., Djebali, W., Belkadhi, A., Cabasson, C., Moing, A., Rolin, D., Brouquisse, R., Gallusci, P., Chaïbi, W. (2015). Impact of long-term cadmium exposure on mineral content of Solanum lycopersicum plants: Consequences on fruit production. South African Journal of Botany, 97, 176-181. DOI : 0.1016/j.sajb.2015.01.010

How-Kit, A., Daunay, A., Mazaleyrat, N., Busato, F., Daviaud, C., Teyssier, E., Deleuze, J.-F., Gallusci, P., Tost, J. (2015). Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants. Plant Molecular Biology, 88 (4), 471-485. DOI : 10.1007/s11103-015-0336-8

Jézéquel, T., Deborde, C., Maucourt, M., Zhendre, V., Moing, A., Giraudeau, P. (2015). Absolute quantification of metabolites in tomato fruit extracts by fast 2D NMR. Metabolomics, 11 (5), 1131-1142. DOI : 10.1007/s11306-015-0780-0

Khozaei, M., Fisk, S., Lawson, T., Gibon, Y., Sulpice, R., Stitt, M., Lefebvre, SC., Raines, CA (2015). Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype. The Plant cell, 27 (2), 432-47. DOI : 10.1105/tpc.114.131011

Liu, R., How-Kit, A., Stammitti, L., Teyssier, E., Rolin, D., Mortain-Bertrand, A., Halle, S., Liu, M., Kong, J., Wu, C., Degraeve-Guilbault, C., Chapman, N. H., Maucourt, M., Hodgman, T. C., Tost, J., Bouzayen, M., Hong, Y., Seymour, G. B., Giovannoni, J. J., Gallusci, P. (2015). A DEMETER-like DNA demethylase governs tomato fruit ripening. Proceedings of the National Academy of Sciences of the United States of America, 112 (34), 10804-9. DOI : 10.1073/pnas.1503362112

Martin, J.-C., Maillot, M., Mazerolles, G., Verdu, A., Lyan, B., Migné, C., Defoort, C., Canlet, C., Junot, C., Guillou, C., Manach, C., Jacob, D., Jouan Rimbaud Bouveresse, D., Paris, E., Pujos-Guillot, E., Jourdan, F., Giacomoni, F., Courant, F., Fave, G., Le Gall, G., Chassaigne, H., Tabet, J.-C., Martin, J.-F., Antignac, J.-P., Shintu, L., Defernez, M., Philo, M., Alexandre Gouaubau, M.-C., Amiot, M. J., Bossis, M., Triba, M., Stojilkovic, N., Banzet, N., Molinié, R. ., Bott, R., Goulitquer, S., Caldarelli, S., Rutledge, D. (2015). Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study . Metabolomics, 11 (4), 807-821. DOI : 10.1007/s11306-014-0740-0

Oustric, J., Antoine, S., Giannettini, J., Gibon, Y., Luro, F., Berti, L., Santini, J. (2015). Biochemical characterization of the primary metabolism and antioxidant defense systems of acidic and acidless citrus genotypes during the major stages of fruit growth. Acta Physiologiae Plantarum, 37 (11), 13 p. DOI : 10.1007/s11738-015-1982-9

Popova, AV., Rausch, S., Hundertmark, M., Gibon, Y., Hincha, DK (2015). The intrinsically disordered protein LEA7 from Arabidopsis thaliana protects the isolated enzyme lactate dehydrogenase and enzymes in a soluble leaf proteome during freezing and drying. Biochimica et biophysica acta. DOI : 10.1016/j.bbapap.2015.05.002

Quentin, A. G., Pinkard, E. A., Ryan, M. G., Tissue, D. T., Baggett, L. S., Adams, H. D., Maillard, P., Marchand, J., Landhäusser, S. M., Lacointe, A., Gibon, Y., Anderegg, W. R., Asao, S., Atkin, O. K., Bonhomme, M., Claye, C., Chow, P. S., Clement-Vidal, A., Davies, N. W., Dickman, L. T., Dumbur, R., Ellsworth, D. S., Falk, K., Galiano, L., Grünzweig, J. M., Hartmann, H., Hoch, G., Hood, S., Jones, J. E., Koike, T., Kuhlmann, I., Lloret, F., Maestro, M., Mansfield, S. D., Martínez-Vilalta, J., Maucourt, M., McDowell, N. G., Moing, A., Muller, B., Nebauer, S. G., Niinemets, Ü., Palacio, S., Piper, F., Raveh, E., Richter, A., Rolland, G., Rosas, T., Saint Joanis, B., Sala, A., Smith, R. A., Sterck, F., Stinziano, J. R., Tobias, M., Unda, F., Watanabe, M., Way, D. A., Weerasinghe, L. K., Wild, B., Wiley, E., Woodruff, D. R. (2015). Non-structural carbohydrates in woody plants compared among laboratories. Tree Physiology, 35 (11), 1146-1165. DOI : 10.1093/treephys/tpv073

Rebolledo, MC., Dingkuhn, M., Courtois, B., Gibon, Y., Clément-Vidal, A., Cruz, DF., Duitama, J., Lorieux, M., Luquet, D (2015). Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Journal of experimental botany. DOI : 10.1093/jxb/erv258

Rolin, D., Teyssier, E., Hong, Y., Gallusci, P. (2015). . Tomato fruit quality improvement facing the functional genomics revolution. In: Palmiro Poltronieri (Ed.), Yiguo Hong (Ed.), Applied Plant Genomics and Biotechnology (p. 154-166). Elsevier Reference Monographs.

Saladié, M., Cañizares, J., Phillips, M. A., Rodriguez-Concepcion, M., Larrigaudière, C., Gibon, Y., Stitt, M., Lunn, J. E., Garcia-Mas, J. (2015). . Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties. BMC Genomics, 16, 440. DOI : 10.1186/s12864-015-1649-3

Salek, R., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., Correa, E., Reijmers, T., Rosato, A., Tenori, L., Turano, P., Marin, S., Deborde, C., Jacob, D., Rolin, D., Dartigues, B., Conesa, P., Haug, K., Rocca-Serra, P., O’Hagan, S., Hao, J., Vliet, M. v., Sysi-Aho, M., Ludwig, C., Bouwman, J., Cascante, M., Ebbels, T., Griffin, J. L., Moing, A., Nikolski, M., Oresic, M., Sansone, S.-A., Viant, M. R., Goodacre, R., Günther, U. L., Hankemeier, T., Luchinat, C., Walther, D., Steinbeck, C. (Auteur de correspondance) (2015). . COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics. DOI : 10.1007/s11306-015-0810-y

Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V (2015). Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1. PloS one, 10 (3), e0120291. DOI : 10.1371/journal.pone.0120291

Teyssier, E., Boureau, L., Chen, W., Liu, R., Degraeve-Guilbault, C., Stammitti, L., Hong, Y., Gallusci, P. (2015). . Epigenetic regulation of fleshy fruit development and ripening. In: Palmiro Poltronieri (Ed.), Yiguo Hong (Ed.), Applied Plant Genomics and Biotechnology (p. 133-152). Elsevier Reference Monographs.

Zhang, N., Gibon, Y., Wallace, JG., Lepak, N., Li, P., Dedow, L., Chen, C., So, YS., Kremling, K., Bradbury, PJ., Brutnell, T., Stitt, M., Buckler, ES (2015). Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population. Plant physiology, 168 (2), 575-83. DOI : 10.1104/pp.15.00025


Allwood, J. W., Cheung, W., Xu, Y., Mumm, R., De Vos, R. C. H., Deborde, C., Biais, B., Maucourt, M., Berger, Y., Schaffer, A. A., Rolin, D., Moing, A., Hall, R. D., Goodacre, R. (2014). Metabolomics in melon: a new opportunity for aroma analysis. Phytochemistry, 99, 61-72. DOI : 10.1016/j.phytochem.2013.12.010

Ariizumi, T., Kishimoto, S., Kakami, R., Maoka, T., Hirakawa, H., Suzuki, Y., Ozeki, Y., Shirasawa, K., Bernillon, S., Okabe, Y., Moing, A., Asamizu, E., Rothan, C., Ohmiya, A., Ezura, H. (2014). Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum). The Plant journal : for cell and molecular biology, 79 (3), 453-465. DOI : 10.1111/tpj.12570

Atanasova-Penichon, V., Bernillon, S., Marchegay, G., Lornac, A., Pinson-Gadais, L., Ponts, N., Zehraoui, E., Barreau, C., Richard-Forget, F. (2014). Bioguided isolation, characterization, and biotransformation by Fusarium verticillioides of maize kernel compounds that inhibit fumonisin production. Molecular plant-microbe interactions : MPMI, 27 (10), 1148-1158. DOI : 10.1094/MPMI-04-14-0100-R

Beauvoit, B., Colombie, S., Monier, A., Andrieu, M.-H., Biais, B., Benard, C., Cheniclet, C., Dieuaide Noubhani, M., Nazaret, C., Mazat, J.-P., Gibon, Y. (2014). Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion. The Plant cell, 26 (8), 3224-42. DOI : 10.1105/tpc.114.127761

Bermúdez, L., de Godoy, F., Baldet, P., Demarco, D., Osorio, S., Quadrana, L., Almeida, J., Asis, R., Gibon, Y., Fernie, A. R., Rossi, M., Carrari, F. (2014). Silencing of the tomato Sugar Partitioning Affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism. Plant Journal, 77 (5), 676-87. DOI : 10.1111/tpj.12418

Beurton-Aymar, M.; Nguyen, T. V.-N.; Colombie, S. Metabolic network reconstruction and their topological analysis. In: Martine Dieuaide-Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis . Methods and Protocols, . Methods in Molecular Biology, 2014, 1090, p. 19-38. New York, USA : Springer Science+Business Media.

Biais, B., Benard, C., Beauvoit, B., Colombie, S., Prodhomme, D., Menard, G., Bernillon, S., Gehl, B., Gautier, H., Ballias, P., Mazat, J.-P., Sweetlove, L. J., Génard, M., Gibon, Y. (2014). Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology, 164, 1204-1221. DOI : 10.1104/pp.113.231241

Chaher, N., Arraki, K., Dillinseger, E., Temsamani, H., Bernillon, S., Pedrot, E., Delaunay, J.-C., Mérillon, J.-M., Monti, J.-P., Izard, J.-C., Atmani, D., Richard, T. (2014). Bioactive stilbenes from Vitis vinifera grapevine shoots extracts. Journal of the Science of Food and Agriculture, 94, 951-954. DOI : 10.1002/jsfa.6341

Deborde C & Jacob D (2014) MeRy-B, a Metabolomic Database and Knowledge Base for Exploring Plant Primary Metabolism. In Sriram G (ed) Plant Metabolism: Methods and Protocols, Methods in Molecular Biology Vol. 1083, pp 3-16.

Desnoues, E., Gibon, Y., Baldazzi, V., Signoret, V., Génard, M., Quilot-Turion, B. (2014). Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios. BMC plant biology, 14 (1), 336 : 1-12. DOI : 10.1186/s12870-014-0336-x

Dieuaide Noubhani, M. (Editeur), Alonso, A. P. (Editeur). Plant Metabolic Flux Analysis. Methods and Protocols. Methods in Molecular Biology, 1090. New York, USA : Springer Science+Business Media, 2014, 365 p. DOI : 10.1007/978-1-62703-688-7

Dieuaide Noubhani, M.; Alonso, A. P. Application of metabolic flux analysis to plants. In: Martine Dieuaide Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis. Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 1-17. New York, USA : Springer Science+Business Media.  DOI : 10.1007/978-1-62703-688-7_1

Dumont, J., Keski-Saari, S., Keinänen, M., Cohen, D., Ningre, N., Kontunen-Soppela, S., Baldet, P., Gibon, Y., Dizengremel, P., Vaultier, M.-N., Jolivet, Y., Oksanen, E., Le Thiec, D. (2014). Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes. Tree Physiology, 34 (3), 253-66. DOI : 10.1093/treephys/tpu004

Génard, M., Baldazzi, V., Gibon, Y. (2014). Metabolic studies in plant organs: don't forget dilution by growth. Frontiers in Plant Science, 5, 1-5. DOI : 10.3389/fpls.2014.00085

Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Petera, M., Duperier, C., Tremblay Franco, M., Martin, J.-F., Jacob, D., Goulitquer, S., Thévenot, E. A., Caron, C. (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 2 p. DOI : 10.1093/bioinformatics/btu813

Gibon, Y. (2014). Why bring post-genomics into the phosphorus-impoverished bush?. Plant, cell & environment, 37 (6), 1273-5. DOI : 10.1111/pce.12265

Hooks MA, Allwood JW, Harrison JKD, Kopka J, Erban A, Goodacre R, Balk J (2014) Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis. Biochem J 463, 309-317

Martin, J.-C., Maillot, M., Mazerolles, G., Verdu, A., Lyan, B., Migne, C., Defoort, C., Canlet, C., Junot, C., Guillou, C., Manach, C., Jacob, D., Jouan-Rimbaud Bouveresse, D., Paris, E., Pujos-Guillot, E., Jourdan, F., Giacomoni, F., Courant, F., Fave, G., Le Gall, G., Chassaigne, H., Tabet, J.-C., Martin, J.-F., Antignac, J.-P., Shintu, L., Defernez, M., Philo, M., Alexandre-Gouaubau, M.-C., Amiot-Carlin, M. J., Bossis, M., Triba, M. N., Stojilkovic, N., Banzet, N., Molinié, R., Bott, R., Goulitquer, S., Caldarelli, S., Rutledge, D. (2014). Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study . Metabolomics, online first, 1-15. DOI : 10.1007/s11306-014-0740-0

Menard, G.; Biais, B.; Prodhomme, D.; Ballias, P.; Gibon, Y. Analysis of enzyme activities. In: Martine Dieuaide-Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis . Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 249-59. New York, USA : Springer Science+Business Media. DOI : 10.1007/978-1-62703-688-7_15

Pianelli, K.; Monier, A.; Andrieu, M.-H.; Beauvoit, B.; Dieuaide Noubhani, M. (14)C pulse labeling to estimate external fluxes and turnovers in primary metabolism. In: Martine Dieuaide Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis. Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 41-52. New York, USA : Springer Science+Business Media. DOI : 10.1007/978-1-62703-688-7_3

Recht, L., Töpfer, N., Batushansky, A., Sikron, N., Zarka, A., Gibon, Y., Nikoloski, Z., Fait, A., Boussiba, S. (2014). Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen-Starvation in the Green Alga Haematococcus pluvialis. The Journal of biological chemistry, 289 (44), 30387-30403. DOI : 10.1074/jbc.M114.555144

Stitt, M., Gibon, Y. (2014). Why measure enzyme activities in the era of systems biology?. Trends in Plant Science, 19 (4), 256-65. DOI : 10.1016/j.tplants.2013.11.003

Wallace, JG., Bradbury, PJ., Zhang, N., Gibon, Y., Stitt, M., Buckler, ES (2014). Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize. PLoS genetics, 10 (12), e1004845. DOI : 10.1371/journal.pgen.1004845


Ahmad, J. N., C. Garcion, E. Teyssier, M. Hernould, P. Gallusci, P. Pracros, J. Renaudin, and S. Eveillard. (2013). Stolbur phytoplasma infection affects DNA methylation processes in tomato plants. Plant Pathology 62:205-216.

Bernillon S, Biais B, Deborde C, Maucourt M, Cabasson C, Gibon Y, Hansen TH, Husted S, De Vos CH, Mumm R, Jonker H, Ward JL, Miller SJ, Baker JM, Burger J, Tadmor Y, Beale MH, Schjoerring JK, Schäffer AA, Rolin D, Hall RD & Moing A (2013) Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics 9: 57-77

Bureau S, Quilot-Turion B, Signoret V, Renaud C, Maucourt M, Bancel D, Renard CMGC (2013). Determination of the composition in sugars and organic acids in peach using mid-infrared spectroscopy: comparison of prediction results according to datasets and different reference methods. Analytical Chemistry, 85: 11312-11318.

Carillo P, Feil R, Gibon Y, Satoh-Nagasawa N, Jackson D, Bläsing OE, Stitt M, Lunn JE (2013) A fluorometric assay for trehalose in the picomole range. Plant Methods 9: 21.

Colombié S & Beurton-Aimar M (2013) Metabolic network reconstructions and their topological analysis. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 19-38.

Dieuaide-Noubhani M & Alonso AP (2013) Application of Metabolic Flux Analysis to Plants. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 1-17.

Fontaine JX, Terce-Laforgue T, Armengaud P, Clement G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B & Dubois F (2013) Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24: 4044-4065.

Garchery C, Gest N, Do PT, Alhagdow M, Baldet P, Menard G, Rothan C, Massot C, Gautier H, Aarrouf J, Fernie AR & Stevens R. (2013) A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water-deficit. Plant Cell Environment 36: 159-175.

Jacob D, Deborde C & Moing A (2013) An efficient spectra processing method for metabolite identification from 1H-NMR metabolomics data. Analytical and Bioanalytical Chemistry 405: 5049-5061.

Mazat J-P & Beauvoit B (2013) Modelling metabolic networks – the theories of metabolism. In Metabolomics coming of age with its technological technology. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 593-621.

Ménard G, Biais B, Prodhomme D, Ballias P & Gibon Y (2013) Analysis of Enzyme Activities. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 249-259.

Ménard G, Biais B, Prodhomme D, Ballias P, Petit J, Just D, Rothan C, Rolin D, Gibon Y (2013) High throughput biochemical phenotyping for plants. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 407-439.

Pascual L, Xu J, Biais B, Maucourt M, Ballias P, Bernillon S, Deborde C, Jacob D, Desgroux A, Faurobert M, Bouchet J-P, Gibon Y, Moing A & Causse M (2013). Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach. Journal of Experimental Botany, 64: 5737-5752.

Pianelli K, Monier A, Andrieu M-H, Beauvoit B, Dieuaide-Noubhani M (2013) 14C pulse labeling to estimate external fluxes and turnovers in primary metabolism. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 41-52

Pribat A, Boureau L, Mortain-Bertrand A,  Bert L, Rolin D, Teyssier E & Gallusci P (2013) Metabolic Engineering of Isoprenoid Biosynthesis in Natural Products (Publisher: Springer Berlin Heidelberg). pp 2813-2851.

Rolin D, Deborde C, Maucourt  M, Cabasson C, Fauvelle F, Jacob D, Canlet C, Moing A (2013) High-resolution 1H-NMR spectroscopy and beyond to explore plant metabolome. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 1-66.

Sagar M, Chervin C, Mila I, Hao YW, Roustan JP, Benichou M, Gibon Y, Biais B, Maury P, Latche A, Pech JC, Bouzayen M, Zouine M (2013) SlARF4, an Auxin Response Factor Involved in the Control of Sugar Metabolism during Tomato Fruit Development. Plant Physiology 161: 1362-1374.

Sulpice R, Tschoep H, Antonio C, Kleessen S, Larhlimi A, Ishihara H, Nikoloski Z, Gibon Y, Fernie AR, Stitt M (2013) Impact of the carbon and nitrogen supply on the connectivity between metabolism and biomass in a large panel of Arabidopsis accessions. Plant Physiology 162: 347-63.

Tercé-Laforgue T, Bedu M, Dargel-Grafin C, Dubois F, Gibon Y, Restivo FM, Hirel B (2013) Resolving the Role of Plant Glutamate Dehydrogenase: II. Physiological Characterization of Plants Overexpressing the Two Enzyme Subunits Individually or Simultaneously. Plant Cell Physiology 54: 1635-1647.


Baldacci F, Chang C, Maucourt M, Deborde C, Hopkins J, Lecomte P, Bernillon S, Brouquisse R, Moing A, Abad P, Hérouart D, Puppo A, Favery B & Frendo P (2012). (Homo)glutathione deficiency impairs root-knot nematode development in Medicago truncatula. Plos Pathogens 8: e1002471.

Ben Akal-Ben Fatma Y, Pianelli K, Dieuaide-Noubhani M, Le Menn A, Deborde C, Maucourt M, Andrieu M-H, Rolin D, Rothan C, Moing A, Bouzid S & Cabasson C (2012) 1H-NMR metabolomics: Profiling method for a rapid and efficient screening of transgenic plants . African Journal of Biotechnology 11: 11386-11399.

Biais B, Bernillon S, Deborde C, Cabasson C, Rolin D, Tadmor Y, Burger J, Schaffer AA, Moing A (2012) Precautions for harvest, sampling, storage and transport of crop plant metabolomics samples. In N Hardy, R Hall, eds, Plant Metabolomics. Humana Press, Totowa, U.S.A., pp 51-63

Calingacion M, Boualaphanh C, Daygon V, Anacleto R, Sackville Hamilton R, Biais B, Deborde C, Maucourt M, Moing A, Mumm R, de Vos R, Erban A, Kopka J, Hansen T, Laursen K, Schjoerring J, Hall R & Fitzgerald M (2012). A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8: 771-783.

Dal Santo S, Stampfl H, Krasensky J, Kempa S, Gibon Y, Petutschnig E, Rozhon W, Heuck A, Clausen T & Jonak C (2012) Stress-Induced GSK3 Regulates the Redox Stress Response by Phosphorylating Glucose-6-Phosphate Dehydrogenase in Arabidopsis. Plant Cell 24: 3380-3392.

Fontaine J-X, Tercé-Laforgue T, Armengaud P, Clément G, Renou J-P, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B & Dubois F (2012) Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24: 4044-4065.

Gibon Y, Rolin D, Deborde C, Bernillon S, Moing A (2012) New opportunities in metabolomics and biochemical phenotyping for plant systems biology In U Roessner, ed, Metabolomics, InTech, pp Available from: http://www.intechopen.com/articles/show/title/new-opportunities-in-metabolomics-and-biochemical-phenotyping-for-plant-systems-biology

Gibon Y, Rolin D (2012) Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material. In N Hardy, R Hall, eds, Plant Metabolomics. Methods in Molecular Biology, Humana Press, Totowa, U.S.A., 860:13-30

Hädrich N, Hendriks JH, Kötting O, Arrivault S, Feil R, Zeeman SC, Gibon Y, Schulze WX, Stitt M & Lunn JE (2012) Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. Plant Journal 70: 231-242.

Mounet F, Moing A, Kowalczyk M, Rohrmann J, Petit J, Garcia V, Maucourt M, Yano K, Deborde C, Aoki K, Berges H, Granell A, Fernie AR, Bellini C, Rothan C & Lemaire-Chamley M (2012) Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development . Journal of Experimental Botany 63: 4901-4917.

Poorter H, Fiorani F, Planck M, Schurr U, Finck A, Gibon Y, Usadel B, Munns R, Atkin OK, Tardieu F & Pons TL (2012) The art of growing plants for experimental purposes: a practical guide for the plant biologist. Functional Plant Biology 39: 821-838.

Sansone S-A, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bouguerelet L, Burns G, Chapman B, Clark T, Coleman L-A, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merril E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios J & Hide W (2012) Toward interoperable bioscience data. Nature Genetics 44: 121-126.

Zhou T, Zhang H, Lai T, Qin C, Shi N, Wang H, Jin M, Zhong S, Fan Z, Liu Y, Wu Z, Jackson S, Giovannoni JJ, Rolin D, Gallusci P & Hong Y (2012) Virus-induced gene complementation reveals a transcription factor network in modulation of tomato fruit ripening. Scientific Reports 2: 836.