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Aquapôle INRA

Inra Bordeaux-Aquitaine
Quartier Ibarron
64310 Saint-Pée-sur-Nivelle
FRANCE

tél : +33 (0) 5 59 51 59 51
fax : +33 (0) 5 59 54 51 52

2004-2008

Publications de l'UMR Ecobiop 2004-2008

2008 - 2007 - 2006 - 2005 - 2004

2008

  •  Bardonnet, A. ; Jatteau, P. Salinity tolerance in young Allis shad larvae (Alosa alosa L.). Ecology of Freshwater Fish. 2007, 17 (1), 193-197..
  • Bardonnet, A. ; Labonne, J.; Laffite, J.; Garnier, J. Relationships between individual behaviour and morphometry under different experimental conditions of temperature and feeding in glass eels (Anguilla anguilla). Knowledge and Management of Aquatic Ecosystems. 2008, 390-391 : 02
  • Benyahya, B. ; St-Hilaire, A. ; Ouarda, T.B.M.J. ; Bobée, B. ; Dumas, J. Comparison of non-parametric and parametric water temperature models on the Nivelle River, France. Hydrological Sciences. 2008, 53 (3) : 640-655
  • Bolliet, V. ; Labonne, J. Individual patterns of rhythmic swimming activity in Anguilla anguilla glass eels synchronised to water current reversal. Journal of Experimental Marine Biology and Ecology. 2008, 362 (2) : 125-130.
  • Bureau Du Colombier, S. ; Lambert, P. ; Bardonnet, A. Is feeding behaviour related to glass eel propensity to migrate ?. Estuarine, Coastal and Shelf Science .2008, 80 (3) : 323-329
  • Castillo, A.G.F. ; Ayllon, F. ; Moran, P. ; Izquierdo, J.I. ; Martinez, J.L. ; Beall, E. ; Garcia-Vasquez, E. Interspecific hybridization and introgression are associated with stock transfers in salmonids. Aquaculture. 2008, 278 (1-4) : 31-36.
  • Chat, J. ; Manicki, A. ; Merchermek, N. Typing for brown trout LDH-C1 alleles together with microsatellites by automated sequencing. Conservation Genetics. 2008, 9 (6) : 1669-1671.
  • Cucherousset, J., Aymes, J.C., Poulet, N., Santoul, F., Céréghino, R. Do native brown trout and non-native brook trout interact reproductively ? Naturwissenschaften. 2008, 95(7) : 647-654
  • Durif, C.M.F.; Travade, F.; Rives, J.; Elie, P.; Gosset, C. Relationship between locomotor activity, environmental factors, and timing of the spawning migration in the European eel Anguilla anguilla. Aquatic Living Resources. 2008, 21 (2) : 163-170
  • Hémery, G.; D'Amico, F.; Castège, I.; Dupont, B.; D'Elbée, J.; Lalanne, Y.; Mouches, C. Detecting the impact of oceano-climatic changes on marine ecosystems using a multivariate index : the case of the Bay of Biscay (North Atlantic-European ocean). Global Change Biology. 2008, 14 : 27-38
  • Hourlay, F.; Libois, R.; D'Amico, F.; Sara, M.; O'Halloran, J.; Michaux, J.R. Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus). Molecular Phylogenetics and Evolution. 2008, 49 : 435-444
  • Jarry, M. ; Artzrouni, M. Un hommage à Jean-Paul Gouteux : la randonnée d’un biologiste au pays des mathématiques. Kupiec, J.J. (Directeur) ; Lecointre, G. (Directeur) ; Silberstein, M. (Directeur) ; Varenne, F. (Directeur). Modèles, simulations, systèmes. (FRA) : Syllepse ; Matière Première. 2008, (3) : 271-282.
  • Jatteau, P. ; Bardonnet, A. Photoresponse in allis shad larvae. Journal of Fish Biology. 2008, 72 (3) : 742-746.
  • Labonne, J. ; Ravigné, V. ; Parisi, B. ; Gaucherel, C. Linking dendritic network structures to population demogenetics: The downside of connectivity. Oikos. 2008, 117 (10) : 1479-1490.
  • Lelong, A. ; Bolliet, V. ; Bancel, D. ; Gaudin, P. Detection of elemental composition and caloric value variability at individual level in newly emerged brown trout Salmo trutta L. Journal of Fish Biology. 2008, 72 (10) : 2695-2699.
  • Rivot, E.; Prévost, E.; Cuzol, A.; Baglinière, J.L.; Parent, E. Hierarchical bayesian modelling with habitat and time covariates for estimating riverine fish population size by successive removal method. Canadian Journal of Fisheries and Aquatic Sciences. 2008, 65 (1) : 117-133
  • Tentelier, C. ; Guillemaud, T. ; Ferry, S. ; Fauvergue, X. Microsatellite-based parentage analysis reveals non-ideal free distribution in a parasitoid population. Molecular Ecology. 2008, 17 (9) : 2300-2309.

2007

  •  Bardonnet, A. ; Jatteau, P. Salinity tolerance in young Allis shad larvae (Alosa alosa L.). Ecology of Freshwater Fish. 2007, : 5 p..
  •  Bolliet, V. ; Lambert, P. ; Rives, J. ; Bardonnet, A. Rhythmic swimming activity in Anguilla anguilla glass eels : synchronisation to water current reversal under laboratory conditions. Journal of Experimental Marine Biology and Ecology. 2007, 344 (1) : 54-66.
  • Bureau du Colombier, S.; Bolliet, V.; Lambert, P.; Bardonnet, A. Energy and migratory behavior in glass eels (Anguilla anguilla). Physiology and Behavior. 2007, 92 : 684-690
  • Castège, I.; Lalanne, Y.; Gouriou, V.; Hemery, G.; Girin, M.; D'Amico, F.; Mouchès, C.; D'Elbée, J.; Soulier, L.; Pensu, J.; Lafitte, D.; Pautrizel, F. Estimating actual seabirds mortality at sea and relationship with oil spills : lesson from the "Prestige" oil spill in Aquitaine (France). Ardeola. 2007, 289-307
  •  Castillo, A.G.F. ; Beall, E. ; Moran, P. ; Martinez, J.L. ; Ayllon, F. ; Garcia-Vasquez, E. Introgression in the genus Salmo via allotriploids. Molecular Ecology. 2007, 16 (8) : 1741-1748.
  • Cucherousset, J., Aymes, J.C., Santoul, F., Céréghino, R. Stable isotope evidence of trophic interactions between introduced brook trout Salvelinus fontinalis and native brown trout Salmo trutta in a mountain stream of south-west France. Journal of Fish Biology. 2007, 71 (Suplt D) : 210-223
  • D'Amico, F.; Hemery, G. Time activity budgets and energetics of Dipper Cinclus cinclus are dictated by temporal variability of river flow. Comparative Biochemistry and Physiology. 2007, Part A, 148(4) : 811-820
  • Danancher, D.; Labonne, J.; Gaudin, P. Scale measurements as a conservation tool in endangered Zingel asper (Linnaeus, 1758). Aquatic Conservation : Marine and Freshwater Ecosystems. 2007, 17(7) : 712-723
  •  Dumas, J. ; Bassenave, J.G. ; Jarry, M. ; Barriere, L. ; Glise, S. Effects of fish farm effluents on egg-to-fry development and survival of brown trout in artificial redds. Journal of Fish Biology. 2007, 70 (6) : 1734-1758.
  •  Dumas, J. ; Olaizola, M. ; Barriere, L. Survie embryonnaire du saumon atlantique (Salmo salar L.) dans un cours d’eau du sud de son aire de répartition, la Nivelle. Bulletin Français de la Pêche et de la Pisciculture. 2007, 384 (1) : 39-60.

2006

  •  Ayllon, F. ; Davaine, P. ; Beall, E. ; Garcia-Vasquez, E. Dispersal and rapid evolution in brown trout colonizing virgin Subantarctic ecosystems. Journal of Evolutionary Biology. 2006, 19 (4) : 1352-1358.
  •  Bardonnet, A. ; Poncin, P ; Roussel, J.M. Brown trout fry move inshore at night : a choice of water depth or velocity ?. Ecology of Freshwater Fish. 2006, 15 (3) : 309-314.
  •  Blanc, J.M. ; Poisson, H. Genetic variation of body size, condition and pyloric caeca number in juvenile brown trout, Salmo trutta L. Aquaculture Research. 2006, 37 (6) : 637-642.
  •  Blanc, J.M. ; Poisson, H. ; Quillet, E. A blue variant in the rainbow trout , Oncorhynchus mykiss Walbaum. Journal of Heredity. 2006, 97 (1) : 89-93.
  •  Dumas, J. ; Marty, S. A new method to evaluate egg-to-fry survival in salmonids, trials with Atlantic salmon. Journal of Fish Biology. 2006, 68 : 284-304.
  •  Facon, B. ; Ravigné, V. ; Goudet, J. Experimental evidence of inbreeding avoidance in the hermaphrodite snail Physa acuta. Evolutionary Ecology. 2006, 20 (5) : 395-406.
  •  Gosset, C. ; Rives, J. ; Labonne, J. Effect of habitat fragmentation on spawning migration of brown trout (Salmo trutta L.). Ecology of Freshwater Fish. 2006, 15 (3) : 247-254.
  •  Kaushik, S. ; Corraze, G. ; Radunz-Neto, J. ; Larroquet, L. ; Dumas, J. Fatty acid profiles of wild brown trout and Atlantic salmon juveniles in the Nivelle basin. Journal of Fish Biology. 2006, 68 (5) : 1376-1387.
  •  Labonne, J. ; Gaudin, P. Modelling population viability in fragmented environments : contribution to the conservation of an endangered percid (Zingel asper). Canadian Journal of Fisheries and Aquatic Sciences. 2006, 63 (3) : 650-659.
  •  Rivot, E. ; Prevost, E. ; Porcher, J.P. ; Bagliniere, J.L. A dynamic metapopulation model for the Atlantic salmon (Salmo salar). Consequences for management. Cahiers de Biologie Marine. 2006, 47 (1) : 113-114.

2005

  • Bardonnet, A. ; Bolliet, B. ; Belon, V. Recruitment abundance estimation : role of glass eel (Anguilla anguilla L.) response to light. Journal of Experimental Marine Biology and Ecology. 2005, 321 : 181-190.
  • Bardonnet, A. ; Riera, P. Feeding of glass eels (Anguilla anguilla) in the course of their estuarine migration : new insights from stable isotope analysis. Estuarine Coastal and Shelf Science. 2005, 63 : 201-209.
  • Bardonnet, A. ; Rigaud, C. ; Labonne, J. Etude expérimentale des comportements de civelles d’Anguilla anguilla L. Influence de la densité et de la disponibilité en abris. Bulletin Français de la Pêche et de la Pisciculture. 2005, (378-379) : 47-65.
  • Basso, O. ; Lascourrèges, J.F. ; Jarry, M. ; Magot, M. The effect of cleaning and disinfecting the sampling well on the microbial communities of deep subsurface water samples. Environmental Microbiology. 2005, 7 (1) : 13-21.
  • Blanc, J.M. Contribution of genetic and environmental variance components to increasing body length in juvenile brown trout Salmo trutta. Journal of the World Aquaculture Society. 2005, 36 (1) : 51-58.
  • Blanc, J.M. ; Maunas, P. Farming evaluation of the “brownbow” triploid hybrid (Oncorhynchus mykiss x Salmo trutta). Aquaculture International. 2005, 13 : 271-281.
  • Blanc, J.M. ; Maunas, P. ; Vallee, F. Effect of triploidy on paternal and maternal variance components in brown trout, Salmo trutta L. Aquaculture Research. 2005, 336 : 1026-1033.
  • Blanc, J.M. ; Vallée, F. ; Maunas, P. ; Fouriot, J.P. Maternal variation in juvenile survival and growth of triploid hybrids between female rainbow trout and male brown trout and brook charr. Aquaculture Research. 2005, 36 : 120-129.
  • Bolliet, V. ; Bardonnet, A. ; Jarry, M. ; Vignes, J.C. ; Gaudin, P. Does embeddedness affect growth performance in juvenile salmonids ? An experimental study in brown trout, Salmo trutta L. Ecology of Freshwater Fish. 2005, 14 : 289-295.
  • Coynel, A. ; Etcheber, H. ; Abril, G. ; Maneux, E. ; Dumas, J. ; Hurtrez, J.E. Contribution of small mountainous rivers to particulate organic carbon input in the Bay of Biscay. Biogeochemistry. 2005, 74 : 151-171.
  • Daufresne, M. ; Capra, H. ; Gaudin, P. Downstream displacement of post-emergent brown trout : effects of development stage and water velocity. Journal of Fish Biology. 2005, 67 : 599-614.
  • Edeline, E. ; Bardonnet, A. ; Bolliet, V. ; Dufour, S. ; Elie, P. Endocrine control of Anguilla anguilla glass eel dispersal : effect of thyroid hormones on locomotor activity and rheotactic behavior. Hormones and Behavior. 2005, 48 : 53-63.
  • Gosset, C. ; Rives, J. Anesthésie et procédures chirurgicales pour l’implantation de radio émetteurs dans la cavité ventrale de truites communes adulets (Salmo trutta). Bulletin Français de la Pêche et de la Pisciculture. 2005, 374 : 21-34.
  • Gosset, C. ; Travade, F. ; Durif, C. ; Rives, J. ; Elie, P. Tests of two types of bypass for downstream migration of eels at a small hydroelectric power plant. River Research and Applications. 2005, 21 : 1095-1105.
  • Labonne, J. ; Gaudin, P. Exploring population dynamics patterns in a rare fish, Zingel asper, through capture-mark-recapture methods. Conservation Biology. 2005, 19 (2) : 463-472.
  • Moran, P. ; Perez, J. ; Dumas, J. ; Beall, E. ; Garcia-Vasquez, E. Stocking-related patterns of genetic variation at enzymatic loci in south European Atlantic salmon populations. Journal of Fish Biology. 2005, 67 : 185-199.
  • Petit, R.J. ; Deguilloux, M.F. ; Chat, J. ; Grivet, D. ; Garnier-Géré, P. ; Vendramin, G.G. Standardizing for microsatellite length in comparisons of genetic diversity. Molecular Ecology. 2005, 14 (3) : 885-890.
  • Prévost, E. ; Crozier, W.W. ; Schon, P.J. Static versus dynamic model for forecasting salmon pre-fishery abundance of the River Bush : a Bayesian comparison. Fisheries Research. 2005, 73 : 111-122.

2004

  •  Ayllon, F. ; Davaine, P. ; Beall, E. ; Martinez, J.L. ; Garcia-Vasquez, E. Bottlenecks and genetic changes in Atlantic salmon (Salmo salar L.) stocks introduced in the Subantarctic Kerguelen islands. Aquaculture. 2004, 237 (1-4) : 103-116.
  •  Ayllon, F. ; Martinez, J.L. ; Davaine, P. ; Beall, E. ; Garcia-Vasquez, E. Interspecific hybridization between Atlantic salmon and brown trout introduced in the subantarctic Kerguelen Islands. Aquaculture. 2004, 230 (1-4) : 81-88.
  •  Bolliet, V. ; Jarry, M. ; Boujard, T. Rhythmic pattern of growth and nutrient retention in response to feeding time in the rainbow trout. Journal of Fish Biology. 2004, 64 : 1616-1624.
  •  Coynel, A. ; Schafer, J. ; Hurtrez, J.E. ; Dumas, J. ; Etcheber, H. ; Blanc, G. Sampling frequency and accuracy of SPM flux estimates in two contrasted drainage basins. Science of the Total Environment. 2004, 330 : 233-247.
  •  Danancher, D. ; Labonne, J. ; Pradel, R. ; Gaudin, P. Capture-recapture estimates of space used in streams (CRESUS) at the population scale : case study on Zingel asper (percid), a threatened species of the Rhone catchment. Canadian Journal of Fisheries and Aquatic Sciences. 2004, 61 (3) : 476-486.
  •  Garcia-Vasquez, E. ; Perez, J. ; Ayllon, F. ; Martinez, J.L. ; Glise, S. ; Beall, E. Asymmetry of post-F1 interspecific reproductive barriers among brown trout (salmo trutta) and Atlantic salmon (Salmo salar). Aquaculture. 2004, 234 (1-4) : 77-84.
  •  Hendry, A. ; Beall, E. Energy use in spawning Atlantic salmon. Ecology of Freshwater Fish. 2004, 13 : 185-196.
  •  Potter, E.C.E. ; Crozier, W.W. ; Schön, P.J. ; Nicholson, M.D. ; Maxwell, D.L. ; Prévost, E. ; Erkinaro, J. ; Gudbergsson, G. ; Karlsson, L. ; Hansen, L.P. ; MacLean, J.C. ; Maoiléidigh, N.O. ; Prusov, S. Estimating and forecasting pre-fishery abundance of Atlantic salmon (Salmo salar L.) in the Northeast Atlantic for the management of mixed-stock fisheries. ICES Journal of Marine Science. 2004, 61 : 1359-1369.
  •  Rivot, E. ; Prévost, E. ; Parent, E. ; Baglinière, J.L. A Bayesian state-space modelling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data. Ecological Modelling. 2004, 179 : 463-485.