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Unité Mixte de Recherche Inra-Univ. Bordeaux "Biodiversité Gènes et Communautés" - Biogeco

Unité mixte de recherche (Inra, Univ. Bordeaux 1) Biodiversité, gènes et communautés (Biogeco)

INRA_rvb150  

INRA Bordeaux-Aquitaine
Site de Recherches Forêt-Bois
69 route d'Arcachon
33612 CESTAS Cedex - FRANCE

2012

Publications 2012

Abadie P, Roussel G, Dencausse B, Bonnet C, Bertocchi E, Louvet J-M, Kremer A, Garnier-Géré P (2012) Strength, diversity and plasticity of postmating reproductive barriers between two hybridizing oak species (Quercus robur L. and Quercus petraea (Matt) Liebl.). Journal of Evolutionary Biology 25, 157-173.

Abdallah F, Noumi Z, Ouled-Belgacem A, Michalet R, Touzard B, Chaieb M (2012) The influence of Acacia tortilis (Forssk.) ssp raddiana (Savi) Brenan presence, grazing, and water availability along the growing season, on the understory herbaceous vegetation in southern Tunisia. Journal of Arid Environments76, 105-114.

A'Hara SW, Amouroux P, Argo E, Avand-Faghih A, Barat A, Barbieri L, Bert TM, Blatrix R, Blin A, Bouktila D, Broome A, Burban C, Capdevielle-Dulac C, Casse N, Chandra S, Cho Kyung J, Cottrell JE, Crawford CR, Davis MC, Delatte H, Desneux N, Djieto-Lordon C, Dubois MP, El-Mergawy AAM, Gallardo-Escarate C, Garcia M, Gardiner MM, Guillemaud T, Haye PA, Hellemans B, Hinrichsen P, Hyun Jeon JI, Kerdelhué C, Kharrat I, Ki Hwan K, Yong Yul K, Ye-Seul K, Labbé EM, Lahood E, Kyung Mi L, Wan-Ok L, Yat-Hung L, Legoff I, Li H, Chung-Ping L, Liu SS, Liu YG, Long D, Maes GE, Magnoux E, Prabin Chandra Mahanta, Makni H, Makni M, Malausa T, Rakesh Matura, McKey D, McMillen-Jackson AL, Mendez MA, Mezghani-Khemakhem M, Michel AP, Paul, M, Muriel-Cunha J, Nibouche S, Normand F, Palkovacs EP, Pande V, Parmentier K, Peccoud J, Piats-Check D, Puchulutegui C, Ramos R, Ravest G, Richner H, Robbens J, Rochat D, Rousselet J, Saladin V, Sauve M, Schlei O, Schultz TF, Scobie AR, Segovia NI, Seyoum S, Silvain JF, Tabone E, Van Houdt JKJ, Vandamme SG, Volckaert AM, Wenburg J, Willis TV, Yong-Jin W, Ye NH, Zhang W, Zhang YX (2012) Permanent genetic resources added to molecular ecology resources database 1 august 2011-30 september 2011. Molecular Ecology Resources12, 185-189.

Barbaro L, Brockerhoff EG, Giffard B, van Halder I (2012) Edge and area effects on avian assemblages and insectivory in fragmented native forests. Landscape Ecology27, 1451–1463.

Barrès B, Carlier J, Seguin M, Fenouillet C, Cilas C, Ravigné V (2012) Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation. Heredity109: 269–279.

Barrès B, Dutech C, Andrieux A, Halkett F, Frey P (2012) Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure. Molecular Ecology 21: 4996–5008.

Bedon F, Villar E, Vincent D, Dupuy J-W, Lomenech A-M, Mabialangoma A, Chaumeil P, Barre A, Plomion C, Gion J-M (2012) Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field. Plant Cell and Environment35, 790-805.

Berciaud S, Rayne F, Kassab S, Jubert C, Faure-Della Corte M, Salin F, Wodrich H, Lafon ME (2012) Adenovirus infections in Bordeaux University Hospital 2008-2010: Clinical and virological features. Journal of Clinical Virology54, 302-307.

Bodénès C, Chancerel E, Gailing O, Vendramin GG, Bagnoli F, Durand J, Goicoechea P, Soliani C, Villani F, Mattioni C, Koelewijn H, Murat F, Salsé J, Roussel G, Boury C, Alberto F, Kremer A, Plomion C (2012) Comparative mapping in the Fagaceae and beyond with EST-SSRs. BMC Plant Biology12, 153.

Brasier CM, Franceschini S, Vettraino AM, Hansen EM, Green S, Robin C, Webber JF, Vannini A (2012) Four phenotypically and phylogenetically distinct lineages in Phytophtora lateralis.Fungal Biology116, 1232-1249.

Cárcamo V, Bustamante E, Trangolao E, María de la Fuente L, Mench M, Neaman A, Ginocchio R (2012) Simultaneous immobilization of metals and arsenic in acidic polluted soils near a copper smelter in central Chile. Environmental Science and Pollution Research19, 1131-1143.

Carrier M, Loppinet-Serani A, Absalon C, Aymonier C, Mench M (2012) Degradation pathways of holocellulose, lignin and alpha-cellulose from Pteris vittata fronds in sub- and super critical conditions. Biomass & Bioenergy43, 65-71.

Castagneyrol B, Jactel H (2012) Unraveling plant-animal diversity relationships: a meta-regression analysis. Ecology93, 2115-2124.

Castagneyrol B, Lagache L, Giffard B, Kremer A, Jactel H (2012) Genetic diversity increases insect herbivory on oak saplings. PloS one7, e44247.

Charra-Vaskou K, Badel E, Burlett R, Cochard H, Delzon S, Mayr S (2012) Hydraulic efficiency and safety of vascular and non-vascular components in Pinus pinaster leaves. Tree Physiology32, 1161–1170.

Choat B, Jansen S, Brodribb TJ, Cochard H, Delzon S, Bhaskar R, Bucci SJ, Feild TS, Gleason SM, Hacke UG, Jacobsen AL, Lens F, Maherali H, Martinez-Vilalta J, Mayr S, Mencuccini M, Mitchell PJ, Nardini A, Pittermann J, Pratt RB, Sperry JS, Westoby M, Wright IJ, Zanne AE (2012) Global convergence in the vulnerability of forests to drought. Nature491, 752-756.

Corcket E, Moulinier J (2012) Growth stimulation and compensatory growth on Elytrigia juncea experiencing different defoliation regimes. Acta Botanica Gallica159, 363-372.

Cordier T, Robin C, Capdevielle X, Desprez-Loustau M-L, Vacher C (2012). Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). Fungal Ecology5, 509–520.

Cordier T, Robin C, Capdevielle X, Fabreguettes O, Desprez-Loustau M-L, Vacher C (2012) The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient. New Phytologist196, 510-519

de Lafontaine G, Asselin H (2012) Soil charcoal stability over the Holocene. Response to comments by Mikael Ohlson. Quaternary Research78, 155–156.

de Lafontaine G, Payette S (2012) Long-term fire and forest history of subalpine balsam fir (Abies balsamea) and white spruce (Picea glauca) stands in eastern Canada inferred from soil charcoal analysis. Holocene22, 191-201.

de Miguel M, de Maria N, Guevara M, Diaz L, Sáez-Laguna E, Sánchez-Gómez D, Chancerel E, Aranda I, Collada C, Plomion C, Cabezas J-A, Cervera M-T (2012) Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers. BMC Genomics13, 527.

Dufour-Kowalski S, Courbaud B, Dreyfus P, Meredieu C, de Coligny F (2012) Capsis: an open software framework and community for forest growth modelling. Annals of Forest Science69, 221-233.

Dulaurent A-M, Porté AJ, van Halder I, Vétillard F, Menassieu P, Jactel H (2012). Hide and seek in forests: colonization by the pine processionary moth is impeded by the presence of nonhost trees. Agricultural and Forest Entomology14, 19-27.

Dutech C, Barrès B, Bridier J, Robin C, Milgroom MG, Ravigné V (2012) The chestnut blight fungus world tour: successive introduction events from diverse origins in an invasive plant fungal pathogen. Molecular Ecology21, 3931-3946.

E Silva D, Badeau V, Legay M, Corcket E, Dupouey JL (2012) Tracking human impact on current tree species distribution using plant communities. Journal of Vegetation Science23, 313-324.

E Silva D, Rezende Mazzella  P, Legay  M, Corcket E, Dupouey  J.L (2012) Does natural regeneration determine the limit of European beech distribution under climatic stress?Forest Ecology and Management266, 263-272.

Fabre B, Piou D, Loos R, Marçais B (2012) Is emergence of pine Dothistroma needle blight in France caused by the cryptic species Dothistroma pini?Phytopathology102, 47-54.

Feau N, Lauron-Moreau A, Piou D, Marçais B, Dutech C, Desprez-Loustau M-L (2012) Niche partitioning of the genetic lineages of the oak powdery mildew complex. Fungal Ecology5, 154-162.

Giffard B, Corcket E, Barbaro L, Jactel H (2012) Bird predation enhances tree seedling resistance to insect herbivores in contrasting forest habitats. Oecologia168, 415-424.

Giffard B, Jactel H, Corcket E, Barbaro L (2012) Influence of surrounding vegetation on insect herbivory: A matter of spatial scale and herbivore specialisation. Basic and Applied Ecology13, 458-465.

Goicoechea PG, Petit RJ, Kremer A (2012) Detecting the footprints of divergent selection in oaks with linked markers. Heredity109, 361-371.

Hein PRG, Bouvet JM, Mandrou E, Vigneron P, Clair B, Chaix G (2012) Age trends of microfibril angle inheritance and their genetic and environmental correlations with growth, density and chemical properties in Eucalyptus urophylla ST Blake wood. Annals of Forest Science69, 681-691.

Jacquet J-S, Orazio C, Jactel H (2012) Defoliation by processionary moth significantly reduces tree growth: a quantitative review. Annals of Forest Science69, 857-866

Jactel H, Branco M, Duncker P, Gardiner B, Grodzki W, Langstrom B, Moreira F, Netherer S, Nicoll B, Orazio C (2012) A multicriteria risk analysis to evaluate impacts of forest management alternatives on forest health in Europe.Ecology and Society17, 52.

Jactel H, Petit J, Desprez-Loustau M-L, Delzon S, Piou D, Battisti A, Koricheva J (2012) Drought effects on damage by forest insects and pathogens: a meta-analysis. Global Change Biology18, 267-276.

Jansen S, Lamy J-B, Burlett R, Cochard H, Gasson P, Delzon S (2012) Plasmodesmatal pores in the torus of bordered pit membranes affect cavitation resistance of conifer xylem. Plant, Cell & Environment 35, 1109–1120.

Kremer A, Abbott AG, Carlson JE, Manos PS, Plomion C, Sisco P, Staton ME, Ueno S, Vendramin GG  (2012) Genomics of Fagaceae. Tree Genetics & Genomes8, 583-610.

Kremer A, Le Corre V (2012) Decoupling of differentiation between traits and their underlying genes in response to divergent selection. Heredity108, 375-385.

Kremer A, Ronce O, Robledo-Arnuncio JJ, Guillaume F, Bohrer G, Nathan R,  Bridle JR, Gomulkiewicz R, Klein EK, Ritland K, Kuparinen A, Gerber G, Schueler S (2012) Long distance gene flow and adaptation of forest trees to rapid climate change. Ecology Letters15, 378–392.

Kumpiene J, Fitts JP, Mench M (2012) Arsenic fractionation in mine spoils 10 years after aided phytostabilization. Environmental Pollution166, 82-88.

Lamarque LJ, Delzon S, Sloan MH, Lortie CJ (2012) Biogeographical contrasts to assess local and regional patterns of invasion: a case study with two reciprocally introduced exotic maple trees.Ecography35, 803-810.

Lamy JB, Lagane F, Plomion C, Cochard H, Delzon S (2012) Micro-evolutionary patterns of juvenile wood density in a pine species. Plant Ecology213, 1781-1792.

Lamy J-B, Plomion C, Kremer A, Delzon S (2012) QST < FST as a signature of canalization. Molecular Ecology21, 5646-5655.

Le Bagousse-Pinguet Y, Gross EM, Straile D (2012) Release from competition and protection determine the outcome of plant interactions along a grazing gradient. Oikos121, 95-101.

Le Corre V, Kremer A (2012) The genetic differentiation at quantitative trait loci under local adaptation. Molecular Ecology 21, 1548–1566.

Le Provost G, Sulmon C, Frigerio J-M, Bodénès C, Kremer A, Plomion C (2012) Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species. Tree Physiology32, 119-134.

Lefèvre S, Wagner S, Petit RJ, de Lafontaine G (2012) Multiplexed microsatellite markers for genetic studies of beech. Molecular Ecology Resources12, 484-491.

Lepoittevin, C., L. Harvengt, C. Plomion and P. Garnier-Géré (2012) Association mapping for growth, straightness and wood chemistry traits in the Pinus pinaster Aquitaine breeding population. Tree Genetics & Genomes8, 113-126.

Maalouf J-P, Le Bagousse-Pinguet Y, Marchand L, Bachelier E, Touzard B, Michalet R (2012) Integrating climate change into calcareous grassland management. Journal of Applied Ecology49, 795-802.

Maalouf J-P, Le Bagousse-Pinguet Y, Marchand L, Touzard B, Michalet R (2012) The interplay of stress and mowing disturbance for the intensity and importance of plant interactions in dry calcareous grasslands. Annals of Botany110, 821-828.

Mackay J, Dean JFD, Plomion C, Peterson DG, Cánovas FM, Pavy N, Ingvarsson PK, Savolainen O, Guevara MA, Fluch S, Vinceti B, Abarca D, Díaz-Sala C, Cervera M-T  (2012) Towards decoding the conifer giga-genome. Plant Molecular Biology80, 555–569.

Mandrou E, Hein PRG, Villar E, Vigneron P, Plomion C, Gion J-M (2012) A candidate gene for lignin composition in Eucalyptus: cinnamoyl-CoA reductase (CCR). Tree Genetics & Genomes8, 353-364.

Marçais B, Desprez-Loustau M-L (2012) European oak powdery mildew: impact on trees, effects of environmental factors, and potential effects of climate change.Annals of Forest Science.

Negim O, Mench M, Bes C, Motelica-Heino M, Amin F, Huneau F, Le Coustumer P (2012) In situ stabilization of trace metals in a copper-contaminated soil using P-spiked Linz-Donawitz slag. Environmental Science and Pollution Research19, 847-857.

Noumi Z, Abdallah L, Touzard B, Chaieb M (2012) Acacia tortilis (Forssk.) subsp. raddiana (Savi) Brenan as a foundation species: a test from the arid zone of Tunisia. The Rangeland Journal34, 17-25.

Papura D, Burban C, van Helden M, Giresse X, Nusillard B, Guillemaud T, Kerdelhué C (2012) Microsatellite and mitochondrial data provide evidence for a single major introduction for the Neartic leafhopper Scaphoideus titanus in Europe. PLoS One7, e36882.

Piotti A, Leonardi S, Buiteveld J, Geburek T, Gerber S, Kramer K, Vettori C, Vendramin GG (2012) Comparison of pollen gene flow among four European beech (Fagus sylvatica L.) populations characterized by different management regimes. Heredity108, 322-331.

Pittermann J, Stuart SA, Dawson TE, Moreau A (2012) Cenozoic climate change shaped the evolutionary ecophysiology of the Cupressaceae conifers. Proceedings of the National Academy of Sciences109, 9647-9652.

Ramos P, Le Provost G, Gantz C, Plomion C, Herrera R (2012) Transcriptional analysis of differentially expressed genes in response to stem inclination in young seedlings of pine. Plant Biology14, 923–933.

Ramos P, Valenzuela C, Le Provost G, Plomion C, Gantz C, Moya-León MA, Herrera R (2012) ACC oxidase and ACC synthase expression profiles after leaning of young radiata (P. radiata D. Don) and maritime pine (P. pinaster Ait.) seedlings. Journal of Plant Growth Regulation31, 382-391.

Rasheed-Depardieu C, Parent C, Crèvecoeur M, Parelle J, Tatin-Froux F, Le Provost G, Capelli N (2012) Identification and expression of nine oak aquaporin genes in the primary root axis of two oak species, Quercus petraea and Quercus robur. PloS One7, e51838.

Rigot T, Conte A, Goffredo M, Ducheyne E, Hendrickx G, Gilbert M (2012) Predicting the spatio-temporal distribution of Culicoides imicola in Sardinia using a discrete-time population model. Parasites & Vectors5, 270.

Rodriguez-Sanchez F, De Frenne P, Hampe A (2012) Uncertainty in thermal tolerances and climatic debt. Nature Climate Change2, 636-637.

Sala A, Hopping K, McIntire EJB, Delzon S, Crone EE (2012) Masting in whitebark pine (Pinus albicaulis) depletes stored nutrients. New Phytologist196, 189–199.

Soularue J-P, Kremer A (2012) Assortative mating and gene flow generate clinal phenological variation in trees. BMC Evolutionary Biology12, 79.

Terraube J, Arroyo BE, Bragin A, Bragin E, Mougeot F (2012) Ecological factors influencing the breeding distribution and success of a nomadic, specialist predator. Biodiversity and Conservation21, 1835-1852.

Ulriksen C, Ginocchio R, Mench M, Neaman A (2012) Lime and compost promote plant re-colonization of metal-polluted, acidic soils. International Journal of Phytoremediation14, 820-833.

Vincent D, Kohler A, Claverol S, Solier E, Joets J, Gibon J, Lebrun M-H, Plomion C, Martin F (2012). Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor. Journal of Proteome Research11, 157-171.

Viscosi V, Antonecchia G, Lepais O, Fortini P, Gerber S, Loy A (2012) Leaf shape and size differentiation in white oaks: Assessment of allometric relationships among three sympatric species and their hybrids. International Journal of Plant Sciences173, 875-884.

Wagner S, Gerber S, Petit RJ (2012) Two highly informative dinucleotide SSR multiplexes for the conifer Larix decidua (European larch). Molecular Ecology Resources12, 717-725.

Xhaard C, Barrès B, Andrieux A, Bousset L, Halkett F, Frey P (2012) Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach. Molecular Ecology21, 2383-2398.