Published articles (with peer review)
2023
Candresse, T., Svanella-Dumas, L., Marais, A., Depasse, F., Faure, C., Lefebvre, M. (2023). Identification of Seven Additional Genome Segments of Grapevine-Associated Jivivirus 1. Viruses, 15(1), 39. DOI : 10.3390/v15010039
Garbelotto, M., Rubino, L., Gonthier, P., Candresse, T., Skoric, D. (2023). The Journal of Plant Pathology Editors' Choice February 2023. DOI : 10.1007/s42161-023-01312-5
Khalili, M., Candresse, T., Koloniuk, I., Safarova, D., Brans, Y., Faure, C., Delmas, M., Massart, S., Aranda, M. A., Caglayan, K., Decroocq, V., Drogoudi, P., Glasa, M., Pantelidis, G., Navratil, M., Latour, F., Spak, J., Pribylova, J., Mihalik, D., Palmisano, F., Saponari, A., Necas, T., Sedlak, J., Marais, A. (2023). The Expanding Menagerie of Prunus-Infecting Luteoviruses. Phytopathology, 113(2), 345-354. DOI : 10.1094/phyto-06-22-0203-r
Maclot, F., Debue, V., Malmstrom, C. M., Filloux, D., Roumagnac, P., Eck, M., Tamisier, L., Blouin, A. G., Candresse, T., Massart, S. (2023). Long-Term Anthropogenic Management and Associated Loss of Plant Diversity Deeply Impact Virome Richness and Composition of Poaceae Communities. Microbiology spectrum, e0485022. DOI : 10.1128/spectrum.04850-22
Moury, B., Michon, T., Simon, V., Palloix, A. (2023). A single nonsynonymous substitution in the RNA-dependent RNApolymerase of Potato virus y allows the simultaneous breakdown of two different forms of antiviral resistance in Capsicum annuum. Viruses, 15(1), 1081. DOI : 10.3390/v15051081
Mrkvová, M., Achs, A., Alaxin, P., Šubr, Z., Predajňa, L., Zetochová, E., Hauptvogel, P., Šoltys, K., Candresse, T., Glasa, M. (2023). Phaseolus vulgaris alphaendornavirus-1 is frequent in bean germplasm in Slovakia and shows low molecular variability. Acta Virologica, 67. DOI : 10.3389/av.2023.11484
Rivarez, M.P.S., Faure, C., Svanella-Dumas, L., Pecman, A., Tušek-Žnidaric, M., Schönegger, D., de Jonghe, K., Blouin, A., Rasmussen, D., Massart, S., Ravnikar, M., Kutnjak, D., Marais, A., Candresse, T. (2023). Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse host plants and in global sequencing data. Phytopathology, accepté pour publication.
Svanella-Dumas, L., Faure, C., Marais, A., Candresse, T. (2023). First report of ash shoestring-associated virus (ASaV) infecting European ash (Fraxinus excelsior L.) in France. Plant Disease, 107(5), 1640. DOI : 10.1094/pdis-09-22-2272-pdn
Svanella-Dumas, L., Vitry, C., Valade, R., Robin, N., Thibord, J.B., Marais, A., Candresse, T. (2023). First Report of Barley Virus G Infecting Winter Barley (Hordeum vulgare) in France. Plant Disease, 107 (2), 591. DOI : 10.1094/PDIS-06-22-1294-PD
Svanella-Dumas, L., Tsarmpopoulos, I., Marais, A., Faure, C., Theil, S., Glasa, M., Predajna, L., Gaudin, J., Tian, S., Porcher, L., Gentit, P., Leite De Oliveira, M., Krause-Sakate, R., Candresse, T. (2023). Molecular and biological characterization of novel and known Sequiviridae members infecting lettuce. Phytopathology. DOI : 10.1094/PHYTO-03-23-0095-R
Teber, S., Gürcan, K., Brevet, M., Palmisano, F., Candresse, T. Dallot, S. (2023), High genetic diversity suggests a long evolutionary history of plum pox virus-M in Turkey. Plant Pathology, 72(2), 300-311. DOI : 10.1111/ppa.13663
Tsarmpopoulos, I., Marais, A., Faure, C., Theil, S., Candresse, T. (2023). A new potyvirus from hedge mustard (Sisymbrium officinale (L.) Scop.) sheds light on the evolutionary history of turnip mosaic virus. Archives of Virology, 168(1), 14. DOI : 10.1007/s00705-022-05682-6
2022
Ayed, C., Hamdi, I., Najar, A., Marais, A., Faure, C., Candresse, T., T., Dridi, B. A. M. (2022). First report of garlic viruses A, B and C on garlic (Allium sativum L.) in Tunisia. Plant Disease, 106 (4), 1312. DOI : 10.1094/pdis-08-21-1706-pdn
Babalola, B. M., Faure, C., Marais,A., Fraile, A., Garcia‐arenal, F., Candresse, T. (2022). First report of Apium virus Y in wild carrot (Daucus carota ssp. carota) in Spain. New Disease Reports, 45(2), e12097. DOI : 10.1002/ndr2.12097
Babalola, B. M., Faure, C., Marais, A., Fraile, A., Garcia-Arenal, F., Candresse, T. (2022). First report of carrot torrado virus 1 (CaTV1) naturally infecting carrots in Spain. Journal of Plant Pathology. DOI : 10.1007/s42161-022-01196-x
Babalola, B., M, Schönegger, D., Faure, C., Marais, A., Fraile, A., Garcia-Arenal, F., Candresse, T. (2022). Identification of two novel putative satellite RNAs with hammerhead structures in the virome of French and Spanish carrot samples. Archives of Virology, 167, 2287-2292. DOI : 10.1007/s00705-022-05538-z
Candresse, T., Faure, C., Marais, A. (2022). First report of grapevine red globe virus (GRGV) and grapevine rupestris vein feathering virus (GRVFV) infecting grapevine (Vitis vinifera L.) in Portugal. Plant Disease. DOI : 10.1094/pdis-06-22-1326-pdn
Diouf, M. B., Gaspard, O., Marais, A., Filloux, D., Gomez, R.-M., Faure, C., Roumagnac, P., Candresse, T., Theil, S., Contreras, S., Teycheney, P.-Y., Umber, M. (2022). Molecular characterization of Cordyline virus 1 isolates infecting yam (Dioscorea spp). Archives of Virology, 167, 2275-2280. DOI : 10.1007/s00705-022-05535-2
Fournier, P., Pellan, L., Barroso-Bergadàc, D., Bohan, D., Candresse, T., Delmotte, F., Dufour, M.C., Lauvergeat, V., Le Marrec, C., Marais, A., Martins, G., Masneuf-Pomarède, I., Rey, P., Sherman, D., This, P., Frioux, C., Labarthe, S., Vacher, C. (2022). The functional microbiome of grapevine throughout plant evolutionary history and lifetime. Advances in Ecological Research. DOI : 10.1016/bs.aecr.2022.09.001
Garbelotto, M., Rubino, L., Candresse, T., Gonthier, P., Janse, J. (2022). The Journal of Plant Pathology Editors’ Choice February 2022. Journal of Plant Pathology, 104, 1-2. DOI : 10.1007/s42161-022-01045-x
Garbelotto, M., Rubino, L., Gonthier, P., Candresse, T., Coutinho, T. (2022). The Journal of Plant Pathology Editors’ Choice August 2022. Journal of Plant Pathology, 104(3), 901-902. DOI : 10.1007/s42161-022-01179-y
Khalili, M., Candresse, T., Brans, Y., Faure, C., Audergon, J.-M., Decroocq, V., Roch, G., Marais, A. (2022). The Molecular Characterization of a New Prunus-Infecting Cheravirus and Complete Genome Sequence of Stocky Prune Virus. Viruses, 14(11), 2325. DOI : 10.3390/v14112325
Khalili, M., Candresse, T., Koloniuk, I., Safarova, D., Brans, Y., Faure, C., Delmas, M., Massart, S., Aranda, M. A., Latour, F., Cagalayan, K., Decroocq, V., Drogoudi, P., Glasa, M., Pantelidis, G., Navratil, M., Spak, J., Pribylova, J., Mihalik, D., Palmisano, F., Saponari, A., Necas, T., Sedlack, J., Marais, A. (2022). The expanding menagerie of Prunus-infecting luteoviruses. Phytopathology. DOI : 10.1094/phyto-06-22-0203-r
Lafforgue, G., Michon, T., Charon, J. (2022). Analysis of the Contribution of Intrinsic Disorder in Shaping Potyvirus Genetic Diversity. Viruses, 14(9), 1959. DOI : 10.3390/v14091959
Lebas, B., Adams, I., Al Rwahnih, M., Baeyen, S., Bilodeau, G. J., Blouin, A., Boonham, N., Candresse, T., Chandelier, A., de Jonghe, K., Fox, A., Gaafar, Y., Gentit, P., Haegeman, A., Ho, W., Hurtado-Gonzales, O., Jonkers, W., Kreuze, J., Kutjnak, D., Landa, B., Liu, M., Maclot, F., Malapi-Wight, M., Maree, H., Martoni, F., Mehle, N., Minafra, A., Mollov, D., Moreira, A., Nakhla, M., Petter, F., Piper, A., Ponchart, J., Rae, R., Remenant, B., Rivera, Y., Rodoni, B., Roenhorst, J. W., Rollin, J., Saldarelli, P., Santala, J., Souza-Richards, R., Spadaro, D., Studholme, D., Sultmanis, S., van der Vlugt, R., Tamisier, L., Trontin, C., Vazquez-Iglesias, I., Vicente, C., Vossenberg, B., Wetzel, T., Ziebell, H., Massart, S. (2022). Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description. EPPO Bulletin, 52(2), 394-418. DOI :10.1111/epp.12863
Magliozzi, C., Artois, M., Bertaccini, A., Candresse, T., Tsiamis, K., D’amico, F., Deriu, I., Gervasini, E., Cardoso, A., Cristina. (2022). European primary datasets of alien bacteria and viruses. Scientific Data, 9(1), 403. DOI : 10.1038/s41597-022-01485-1
Massart, S., Adams, I., Al Rwahnih, M., Baeyen, S., Bilodeau, G.J., Blouin, A.G., Boonham, N., Candresse, T., Chandelier, A., de Jonghe, K., Fox, A., Gaafar, Y.Z.A., Gentit, P., Haegeman, A., Ho, W., Hurtado-Gonzales, O., Jonkers, W., Kreuze, J., Kutjnak, D., Landa, B., Liu, M., Maclot, F., Malapi-Wight, M., Maree, H., Martoni, F., Mehle, N., Minafra, A., Mollov, D., Moreira, A., Nakhla, M., Petter, F., Piper, A.M., Ponchart, J., Rae, R., Remenant, B., Rivera, Y., Rodoni, B., Botermans, M., Roenhorst, J.W., Rollin, J., Saldarelli, P., Santala, J., Souza-Richards, R., Spadaro, D., Studholme, D.J., Sultmanis, S., van der Vlugt, R., Tamisier, L., Trontin, C., Vazquez, I., Vicente, C.S.L., Vosseberg, B.T.L.H., Westenberg, M., Wetzel, T., Ziebell, H. Lebas, B.S. (2022). Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests. Peer Community Journal, 2: e62. DOI : 10.24072/pcjournal.181
Massé, D., Filloux, D., Candresse, T., T., Massart, S., Marais, A., Verdin, E., Cassam, N., Fernandez, E., Roumagnac, P., Teycheney, P.-Y., Lefeuvre, P., Lett, J.-M. (2022). Identification of a novel vitivirus from pineapple in Reunion Island. Archives of Virology, 167, 2355-2357. DOI : 10.1007/s00705-022-05512-9
Mollov, D., Filloux, D., Grinstead, S., Bolus, S., Claude, L., Fernandez, E., Julian, C., Candresse, T., Lockhart, B., Roumagnac, P., Rott, P. Daugrois, J.H. (2022). Sugarcane mild mosaic virus: The rediscovery of an identified but unrecognized virus. Plant Pathology. DOI : 10.1111/ppa.13654
Moubset, O., Francois, S., Maclot, F., Palanga, E., Julian, C., Claude, L., Fernandez, E., Rott, P., Daugrois, J.H., Lorquin, A., Bernardo, P., Blouin, A., Temple, C., Kraberger, S., Fontenele, R., Harkins, G., Marais-Colombel, A., Candresse, T., Ben Chéhida, S., Lefeuvre, P., Lett, J.M., Varsani, A., Massart, S., Ogliastro, M.H., Martin, D., Filloux, D. & Roumagnac, P. (2022). Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses. Phytopathology. DOI : 10.1094/PHYTO-03-22-0096-RVW
Paiva, T., O, Schneider, A., N, Bataille, L., Chovin, A., Anne, A., Michon, T., Wege, C., Demaille, C. (2022). Enzymatic Activity of Individual Bioelectrocatalytic Viral Nanoparticles: Dependence of Catalysis on the Viral Scaffold and its Length. Nanoscale, 14, 875-889. DOI : 10.1039/d1nr07445h
Rehanek, M., Karlin, D. G., Bandte, M., Al Kubrusli, R., Nourinejhad Zarghani, S., Candresse, T., Büttner, C., von Bargen, S. (2022). The Complex World of Emaraviruses—Challenges, Insights and Prospects. Forests, 13(11), 1868. DOI : 10.3390/f13111868
Rocher, M., Simon, V., Jolivet, M.-D., Sofer, L., Deroubaix, A.-F., Germain, V., Mongrand, S., German-Retana, S. (2022). StREM1.3 REMORIN Protein Plays an Agonistic Role in Potyvirus Cell-to-Cell Movement in N. benthamiana. Viruses, 14(3), 574. DOI : 10.3390/v14030574
Šafářová, D., Candresse, T., Navrátil, M. (2022). Complete genome sequence of a novel cytorhabdovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Archives of Virology, 167(7), 1589-1592. DOI : 10.1007/s00705-022-05444-4
Schönegger, D., Babalola, B. M., Marais, A., Faure, C., Candresse, T. (2022). Diversity of polerovirus‐associated RNAs in the virome of wild and cultivated carrots. Plant Pathology, 71(9), 1892-1900. DOI : 10.1111/ppa.13623
Schönegger, D., Marais, A., Faure, C., Candresse, T. (2022). A new flavi-like virus identified in populations of wild carrots. Archives of Virology, 167, 2407-2409. DOI : 10.1007/s00705-022-05544-1
Sukhorukov, G., Khalili, M., Gascuel, O., Candresse, T., Marais, A., Nikolski, M. (2022). VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data. Frontiers in Bioinformatics, 2, 867111. DOI : 10.3389/fbinf.2022.867111
Svanella-Dumas, L., Candresse, T., Lefebvre, M., Lluch, J., Valiere, S., Larignon, P., Marais, A. (2022). First report of grapevine virus L infecting grapevine in southeast France. Plant Disease, 106 (5), 1536. DOI : 10.1094/pdis-10-21-2310-pdn
Svanella-Dumas, L., Faure, C., Marais, A., Candresse, T. (2022). First report of ash shoestring-associated virus (ASaV) infecting European ash (Fraxinus excelsior L.) in France. Plant disease. DOI : 10.1094/PDIS-09-22-2272-PDN
Svanella-Dumas, L., Vitry, C., Valade, R., Robin, N., Thibord, J. B., Marais, A., Candresse, T. (2022). First report of barley virus G infecting winter barley (Hordeum vulgare L.) in France. Plant disease. DOI : 10.1094/PDIS-06-22-1294-PDN
Tayeh, C., Mannino, M. R., Mosbach‐Schulz, O., Stancanelli, G., Tramontini, S., Gachet, E., Candresse, T., Jaques Miret, J. A., Jeger, M. J. (2022). Proposal of a ranking methodology for plant threats in the EU. EFSA Journal, 20(1), e07025. DOI : 10.2903/j.efsa.2022.7025
Teber, S., Gürcan, K., Brevet, M., Palmisano, F., Candresse, T. Dallot, S. (2022), High genetic diversity suggests a long evolutionary history of plum pox virus-M in Turkey. Plant Pathology. DOI : 10.1111/ppa.13663
Umber, M., Filloux, D., Svanella-Dumas, L., Bonheur, L., Acina-Mambole, I., Gomez, R. M., Faure, C., Anzala, F., Pavis, C., Roumagnac, P., Marais, A., Theil, S., Candresse, T., Teycheney, P. Y. (2022). Host range and molecular variability of the sadwavirus dioscorea mosaic associated virus. Archives of virology, 167, 917-922. DOI : 10.1007/s00705-022-05379-w
2021
Canales, C., Morán, F., Candresse, T., T., Olmos, A., Ruiz-García, A. B. (2021). First report of Passiflora edulis symptomless virus in pomegranate in Spain. Journal of Plant Pathology, 103, 1375. DOI : 10.1007/s42161-021-00940-z
Chiumenti, M., Navarro, B., Candresse, T., Flores, R., di Serio, F. (2021). Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices. Virus evolution, veab001. DOI : 10.1093/ve/veab001
Garbelotto, M., Gonthier, P., Janse, J., Candresse, T., Rubino, L. (2021). The Journal of Plant Pathology Editors’ Choice May 2021. Journal of Plant Pathology, 103(2), 407-408. DOI : 10.1007/s42161-021-00849-7
Glasa, M., Hančinský, R., Šoltys, K., Predajňa, L., Tomašechová, J., Hauptvogel, P., Mrkvová, M., Mihálik, D. Candresse, T. (2021). Molecular Characterization of Potato Virus Y (PVY) Using High-Throughput Sequencing: Constraints on Full Genome Reconstructions Imposed by Mixed Infection Involving Recombinant PVY Strains. Plants, 10(4), 753. DOI : 10.3390/plants10040753
Gouguet, P., Gronnier, J., Legrand, A., Perraki, A., Jolivet, M. D., Deroubaix, A. F., German-Retana, S., Boudsocq, M., Habenstein, B., Mongrand, S., Germain, V. (2021). Connecting the dots: from nanodomains to physiological functions of REMORINs. Plant physiology, 185(3), 632–649. DOI : 10.1093/plphys/kiaa063
Groppi, A., Liu, S., Cornille, A., Decroocq, S., Bui, Q. T., Tricon, D., Cruaud, C., Arribat, S., Belser, C., Marande, W., Salse, J., Huneau, C., Rodde, N., Rhalloussi, W., Cauet, S., Istace, B., Denis, E., Carrère, S., Audergon, J. M., Roch, G., … Decroocq, V. (2021). Population genomics of apricots unravels domestication history and adaptive events. Nature communications, 12(1), 3956. DOI : 10.1038/s41467-021-24283-6
Kutnjak, D., Tamisier, L., Adams, I., Boonham, N., Candresse, T., Chiumenti, M., De Jonghe, K., Kreuze, J. F., Lefebvre, M., Silva, G., Malapi-Wight, M., Margaria, P., Mavric Plesco, I., McGreig, S., Miozzi, L., Remenant, B., Reynard, J. S., Rollin, J., Rott, M., Schumpp, O., Massart, S., Haegeman, A. (2021). A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses. Microorganisms, 9(4), 841. DOI : 10.3390/microorganisms9040841
Kwibuka, Y., Bisimwa, E., Blouin, A., G, Bragard, C., Candresse, T., Faure, C., Filloux, D., Lett, J.-M., Maclot, F., Marais, A., Ravelomanantsoa, S., Shakir, S., Vanderschuren, H., Massart, S. (2021). Novel Ampeloviruses Infecting Cassava in Central Africa and the South-West Indian Ocean Islands. Viruses, 13(6), 1030. DOI : 10.3390/v13061030
Le Bihan, Z., Hastoy, C., Cosson, P., Boutié, P., Rolin, D., Schurdi-Levraud, V. (2021). To cut or not to cut? That is the question in first year harvest of Stevia rebaudiana Bertoni production. Industrial Crops and Products, 162, 113209. DOI : 10.1016/j.indcrop.2020.113209
Lefebvre, M., Gaignard, A., Folschette, M., Bourdon, J., Guziolowski, C. (2021). Large-scale regulatory and signaling network assembly through linked open data. Database - The journal of Biological Databases and Curation, baaa113. DOI : 10.1093/database/baaa113
Liu, S., Decroocq, S., Harte, E., Tricon, D., Chague, A., Balakishiyeva, G., Kostritsyna, T., Turdiev, T., Saux, M.F.-L., Dallot, S., Giraud, T., E, Decroocq, V. (2021). Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section. Tree Genetics & Genomes 17, 2. DOI : 10.1007/s11295-020-01484-6
Ma, Y., Fort, T., Marais, A., Lefebvre, M., Theil, S., Vacher, C., Candresse, T. (2021, 2021). Leaf‐associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Plant-Environment Interactions, 2, 87-99. DOI : 10.1002/pei3.10043
Ma, Y., Svanella-Dumas, L., Julian, C., Galzi, S., Fernandez, E., Yvon, M., Pirolles, E., Lefebvre, M., Filloux, D., Roumagnac, P., Candresse, T. (2021). Genome characterization and diversity of trifolium virus 1 : identification of a novel legume-infecting capulavirus. Archives of Virology, 166(9), 2573-2578. DOI : 10.1007/s00705-021-05135-6
Maclot, F., Candresse, T., Filloux, D., Rott, P., Malmstrom, C., van der Vlugt, R., Massart, S., Roumagnac, P. (2021). De la paire de bottes à la paire de bases : de l’intérêt d’étudier l’écologie des viromes de plantes. Virologie, 25(1), 29-42. DOI : 10.1684/vir.2021.0879
Marais, A., Faure, C., Comont, G., Candresse, T., Stempien, E., & Corio-Costet, M.-F. (2021). Characterization of the Mycovirome of the Phytopathogenic Fungus, Neofusicoccum parvum. Viruses, 13(3), 375. DOI: 10.3390/v13030375
Marais, A., Murolo, S., Faure, C., Brans, Y., Larue, C., Maclot, F., Massart, S., Chiumenti, M., Minafra, A., Romanazzi, G., Lefebvre, M., Barreneche, T., Robin, C., Petit, R., Candresse, T. (2021). Sixty years from the first disease description, a novel badnavirus associated with chestnut mosaic disease. Phytopathology, 111(6), 1051-1058. DOI : 10.1094/phyto-09-20-0420-r
Mathioudakis, M., M, Maliogka, V., I, Candresse, T., Nickel, O., Fajardo, T. V. M., Budzyńska, D., Hasiów-Jaroszewska, B., Katis, N., I. (2021). Molecular Characterization of the Coat Protein Gene of Greek Apple Stem Pitting Virus Isolates: Evolution through Deletions, Insertions, and Recombination Events. Plants, 10(5), 917. DOI : 10.3390/plants10050917
Meguerditchian, C., Ergun, A., Decroocq, V., Lefebvre, M., Bui, Q.-T. (2021). Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome. Peer Community Journal, 1, e48. DOI : 10.24072/pcjournal.57
Monnot, S., Desaint, H., Mary-Huard, T., Moreau, L., Schurdi-Levraud, V., Boissot, N. (2021, 2021-11). Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances. Cells, 10(11), 3080. DOI : 10.3390/cells10113080
Nourinejhad Zarghani, S., Khalili, M., Dizadji, A., Wetzel, T. (2021). First report of grapevine red globe virus in grapevine in Iran. Journal of Plant Pathology, 103(2), 661-661. DOI : 10.1007/s42161-021-00749-w
Parrella, G., Troiano, E., Faure, C., Marais, A., Candresse, T. (2021). First Report of Alfalfa mosaic virus in Chayote in Italy. Plant disease, 105(3), 698. DOI : 10.1094/PDIS-10-20-2117-PDN
Rasouli, D., Werbrouck, S., Maleki, B., Jafary, H., Schurdi-Levraud, V. (2021). Elicitor-induced in vitro shoot multiplication and steviol glycosides production in Stevia rebaudiana. South African Journal of Botany, 137, 265-271. DOI : 10.1016/j.sajb.2020.10.023
Ravelonandro, M., Briard, P., Scorza, R., Callahan, A., Zagrai, I., Kundu, J. K., Dardick, C. (2021). Robust Response to Plum pox virus Infection via Plant Biotechnology. Genes, 12(6), 816. DOI : 10.3390/genes12060816
Rumbou., A., Candresse, T., von Bargen S., Büttner, C. (2021). Next-Generation Sequencing Reveals a Novel Emaravirus in Diseased Maple Trees From a German Urban Forest. Frontiers in Microbiology, 11:621179. DOI: 10.3389/fmicb.2020.621179
Stam, R., Gladieux, P., Vinatzer, B. A., Goss, E. M., Potnis, N., Candresse, T., Brewer, M. T. (2021). Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology. Phytopathology, 111(1), 8–11. DOI : 10.1094/PHYTO-11-20-0528-FI
Svanella-Dumas, L., Marais, A., Faure, C., Lefebvre, M., Gaudin, J., Candresse, T. (2020). First report of lettuce necrotic leaf curl virus infecting cultivated lettuce in France. Plant disease, 105(4), 1233. DOI : 10.1094/PDIS-11-20-2348-PDN
Tamisier, L., Haegeman, A., Foucart, Y., Fouillien, N., Al Rwahnih, M., Buzkan, N., Candresse, T., Chiumenti, M., De Jonghe, K., Lefebvre, M., Margaria, P., Reynard, J.-S., Stevens, K., Kutnjak, D., Massart, S. (2021) Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection. Zenodo, 4273791, version 4 peer-reviewed and recommended by Peer community in Genomics. DOI : 10.5281/zenodo.4273791
Caglayan, K., Gazel, M., Roumi, V., Kocabag, H.D., Tunç, B., Reynard, J.S., Ruiz-García, A.B., Olmos, A., Candresse, T. (2020). Identification of Pomegranate as a New Host of Passiflora Edulis Symptomless Virus (PeSV) and Analysis of PeSV Diversity. Agronomy. 2020; 10(11):1821. DOI : 10.3390/agronomy10111821
Candresse, T., A. Marais, C. Faure, M. Lefebvre, T. Lacombe and J.-M. Boursiquot (2020). Complete genome sequence of a novel grapevine-infecting member of the genus Polerovirus, grapevine polerovirus 1. Archives of Virology 165(7): 1683-1685. DOI : 10.1007/s00705-020-04640-4
Fuchs, M., Bar-Joseph, M., Candresse, T., Maree, H.J., Martelli, G.P., Melzer6, M.J., Menzel, W., Minafra, A., Sabanadzovic, S., ICTV Report Consortium (2020). ICTV Virus Taxonomy Profile: Closteroviridae. Journal of General Virology, 101, 364-365. DOI : 10.1099/jgv.0.001397
Garbelotto, M., Rubino, L., Candresse, T., Janse, J., Gonthier, P. (2020). The Journal of Plant Pathology Editors’ Choice November 2020. Journal of Plant Pathology, 102 (4), 983-984. DOI : 10.1007/s42161-020-00691-3
Guillaumie, S., Decroocq, S., Ollat, N., Delrot, S., Gomes, E., Cookson, S. (2020). Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators. BMC Plant Biology, 20 (1), 43. DOI : 10.1186/s12870-020-2258-0
Gürcan, K., Teber S., Candresse, T. (2020). Genetic analysis suggests a long and largely isolated evolutionary history of plum pox virus strain D in Turkey. Plant Pathology, 69 (2). DOI : 10.1111/ppa.13115
Hančinský, R., Mihálik, D., Mrkvová, M., Candresse, T., Glasa, M. (2020). Plant Viruses Infecting Solanaceae Family Members in the Cultivated and Wild Environments: A Review. Plants, 9(5), 667. DOI : 10.3390/plants9050667
Hily, J.M., Poulicard, N., Candresse, T., Vigne, E., Beuve, M., Renault, L., Velt, A., Spilmont, A.S. & Lemaire, O. (2020). Datamining, genetic diversity analyses and phylogeographic reconstructions redefine the evolutionary history of grapevine Pinot gris virus and grapevine berry inner necrosis virus. Phytobiomes Journal, 24 (2), 165-177. DOI : 10.1094/PBIOMES-10-19-0061-R
Khalili, M., Candresse, T., Faure, C. et al. (2020). Complete genome sequence of almond luteovirus 1, a novel luteovirus infecting almond. Archives of Virology, 165 (9), 2123-2126. DOI : 10.1007/s00705-020-04715-2
Kreuze, J., Vaira, A.M., Menzel, W., Candresse, T., Zavriev, S., Hammond, K.J., Hyun Ryu, K., and I. Report Consortium (2020). ICTV Virus Taxonomy Profile: Alphaflexiviridae. Journal of General Virology, 101 (7), 699-700. DOI : 10.1099/jgv.0.001436
Le Bihan, Z., Cosson, P., Rolin, D., Schurdi‐Levraud, V. (2020). Phenological growth stages of stevia (Stevia rebaudiana Bertoni) according to the BBCH scale. Ann Appl Biol., 177 (3), 404-416. DOI:10.1111/aab.12626
Ma, Y., Marais, A., Lefebvre, M., Faure, C., Candresse, T. (2020). Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum. Virology, 540, 38-44. DOI : 10.1016/j.virol.2019.11.009
Ma, Y., Marais, A., Lefebvre, M., Theil, S., Svanella-Dumas, L., Faure, C., Candresse, T. (2020). Phytovirome Analysis of Wild Plant Populations: Comparison of Double-Stranded RNA and Virion-Associated Nucleic Acid Metagenomic Approaches. Journal of Virology, 94 (1), e01462-9. DOI : 10.1128/JVI.01462-19
Maclot, F.J., Candresse, T., Filloux,D., Malmstrom , C.M., Roumagnac, P., Van Der Vlugt, R.A.V., Massart, S. (2020). Illuminating an ecological blackbox: Using High Throughput Sequencing to characterize the plant virome across scales. Frontiers in Microbiology, 11, 578064. DOI : 10.3389/fmicb.2020.578064
Marais, A., Faure, C., Lefebvre, M., Lacombe, T., Boursiquot, J.M., Candresse, T. (2020) Molecular diversity of grapevine Kizil Sapak virus and implications for its detection. Archives of Virology, 165, 1849-1853. DOI : 10.1007/s00705-020-04673-9
Marais, A., Murolo, S., Faure, C., Brans, Y., Larue, C., Maclot, F., Massart, S., Chiumenti, M., Minafra, A., Romanazzi, G., Lefebvre, M., Barreneche, T., Robin, C., Petit, R. J., Candresse, T. (2020). Sixty years from the first disease description, a novel badnavirus associated with chestnut mosaic disease. Phytopathology, Online first. DOI : 10.1094/PHYTO-09-20-0420-R
Marais, A., Šafářová, D., Navrátil, M., Faure, C., Cornaggia, D., Brans, Y., Suchá, J., Candresse, T. (2020). Complete genome sequence of cherry virus T, a novel cherry-infecting tepovirus. Arch Virol., 165, 1711-1714. DOI : 10.1007/s00705-020-04656-w.
Marais, A., Umber, M., Filloux, D., Gomez, R.-M., Faure, C., Pavis, C., Julian, C., Roumagnac, P., Acina-Mambole, I., Bonheur, L., Theil, S., Contreras, S., Candresse, T., Teycheney, P.-Y. (2020). Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Archives of Virology, 165, 2653–2657. DOI : 10.1007/s00705-020-04787-0
Nickel, O., Fajardo, T.V.M., Candresse, T. (2020). First report on detection of three bunya-like viruses in apples in Brazil. Plant Disease, 104(11). DOI : 10.1094/PDIS-02-20-0283-PDN
Paiva, T.O., Torbensen, K., Patel, A.N., Anne, A., Chovin, A., Demaille, C., Bataille, L., Michon, T. 2020. Probing the Enzymatic Activity of Individual Biocatalytic fd-Viral Particles by Electrochemical-Atomic Force Microscopy. ACS Catalysis, 10 (14), 7843-7856. DOI: 10.1021/acscatal.0c01920
Reynard, J. S., Brodard, J., Remoliff, E., Lefebvre, M., Schumpp, O., & Candresse, T. (2020). A novel foveavirus identified in wild grapevine (Vitis vinifera subsp. sylvestris). Archives of virology, 165(12), 2999–3002. DOI : 10.1007/s00705-020-04817-x
Rumbou, A., Candresse, T., Marais, A., Svanella-Dumas, L., Landgraf, M., von Bargen, S., Büttner, C. (2020). Unravelling the birch virome: RNA-Seq reveals a complex of known and novel viruses. PLoS ONE, 15(6), e0221834. DOI : 10.1371/journal.pone.0221834
Ruiz-García, A.B., Candresse, T., Canales, C., Morán, F., Machado de Oliveira, C., Bertolini, E., Olmos, A. (2020) Molecular Characterization of the Complete Coding Sequence of Olive Leaf Yellowing-Associated Virus. Plants, 9 (10), 1272. DOI : 10.3390/plants9101272
Svanella-Dumas, L., Marais, A., Faure, C., Lefebvre, M., Gaudin, J., Candresse, T. (2020). First report of lettuce necrotic leaf curl virus infecting cultivated lettuce in France. Plant disease, advance online. DOI : 10.1094/PDIS-11-20-2348-PDN
Umber, M., Filloux, D., Gélabale, S., Gomez, R.-M., Marais, A., Gallet, S., Gamiette, F,; Pavis, C., Teycheney, P.-Y. (2020). Molecular Viral Diagnosis and Sanitation of Yam Genetic Resources: Implications for Safe Yam Germplasm Exchange. Viruses, 12 (10), 1101. DOI : 10.3390/v12101101
Walter, J., Barra, A., Charon, J., Tavert-Roudet, G., Michon, T. (2020). Spectroscopic Investigation of the Kinetic Mechanism Involved in the Association of Potyviral VPg with the Host Plant Translation Initiation Factor eIF4E. Int J Mol Sci. 2020;21(16): E5618. DOI : 10.3390/ijms21165618
Yang, Y., Xing, F., Li, S., Che, H.Y., Wu, Z.G., Candresse, T., Li, S.F. (2020). Dendrobium viroid, a new monocot-infecting apscaviroid. Virus Research, 282, pp.197958. 10.1016/j.virusres.2020.197958
Yu J, Conrad AO, Decroocq V, Zhebentyayeva T, Williams DE, Bennett D, Roch G, Audergon J-M, Dardick C, Liu Z, Abbott AG and Staton ME (2020) Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach. Front. Plant Sci. 11, 180. doi: 10.3389/fpls.2020.00180
2019
Aranzana, M. J., Decroocq, V., Dirlewanger, E., Eduardo, I., Gao, Z. S., Gasic, K., Iezzoni, A., Jung, S., Peace, C., Prieto, H., Tao, R., Verde, I., Abbott, A. G., Arús, P (2019). Prunus genetics and applications after de novo genome sequencing: achievements and prospects. Horticulture Research, 6, 58. DOI : 10.1038/s41438-019-0140-8
Ayed, C., Marais, A., Faure, C., Candresse, T., Hamdi, I., Najar, A., Dridi, B. (2019). First Report of Onion yellow dwarf virus, Leek yellow stripe virus, and Shallot latent virus on garlic (Allium sativum L.) in Tunisia. Plant Disease,103 (8), 2143. , DOI : 10.1094/PDIS-09-18-1618-PDN
Conrad, AO., Yu, J., Staton, ME., Audergon, JM., Roch, G., Decroocq, V., Knagge, K., Chen, H., Zhebentyayeva, T., Liu, Z., Dardick, C., Nelson, CD., Abbott, AG (2019). Association of the phenylpropanoid pathway with dormancy and adaptive trait variation in apricot (Prunus armeniaca). Tree physiology, 39, 1136-1148. DOI : 10.1093/treephys/tpz053
Cosson, P., Hastoy, C., Errazzu, L. E., Budeguer, C. J., Boutié, P., Rolin, D., Schurdi-Levraud, V. (2019). Genetic diversity and population structure of the sweet leaf herb, Stevia rebaudiana B., cultivated and landraces germplasm assessed by EST-SSRs genotyping and steviol glycosides phenotyping. BMC Plant Biology, 19 (1), 436. DOI : 10.1186/s12870-019-2061-y
Dallot, S., Karychev, R., Dolgikh, Thébaud, G., Jacquot, E., Decroocq, V. (2019). First Report of Plum pox virus Strain W in Kazakhstan, on Prunus domestica. Plant Disease, 103 (10), 2702-2702. DOI : 10.1094/PDIS-02-19-0351-PDN
Golyaev, V., Candresse, T., Rabenstein, F., Pooggin, M. (2019). Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves. Scientific Reports, 9. , DOI : 10.1038/s41598-019-55547-3
Hastoy, C., Le Bihan, Z., Gaudin, J., Cosson, P., Rolin, D., Schurdi-Levraud, V. (2019). First report of Septoria sp. infecting Stevia rebaudiana in France and screening of Stevia rebaudiana genotypes for host resistance. Plant Disease, 103 (7), 1544-1550. DOI : 10.1094/PDIS-10-18-1747-RE
Le Bihan, Z., Gaudin, J., Robledo-Garcia, F., Cosson, P., Hastoy, C., Rolin, D., Schurdi-Levraud, V. (2019). First Report of Sclerotium stem rot caused by Sclerotium rolfsii on Stevia rebaudiana in southwestern France. Plant Disease. DOI : 10.1094/PDIS-04-19-0696-PDN
Lefebvre, M., Theil, S., Ma, Y., Candresse, T. (2019). The VirAnnot pipeline: a resource for automated viral diversity estimation and operational taxonomy units (OTU) assignation for virome sequencing data. Phytobiomes Journal, 3, 256-259. DOI : 10.1094/PBIOMES-07-19-0037-A
Liu, S., Cornille, A., Decroocq, S., Tricon, D., Chague, A., Eyquard, J.-P., Liu, W.-S., Giraud, T., Decroocq, V. (2019). The complex evolutionary history of apricots: species divergence, gene flow and multiple domestication events. Molecular Ecology, 28 (24), 5299-5314. DOI : 10.1111/mec.15296
Ma, Y., Marais, A., Lefebvre, M., Faure, C., Candresse, T. (2019). Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum. Virology, 540, 38-44. DOI : 10.1016/j.virol.2019.11.009
Marais, A., Faure, C., Theil, S., Candresse, T. (2019). Characterization of the virome of shallots affected by the shallot mild yellow stripe disease in France. Plos One, 14 (7), e0219024. , DOI : 10.1371/journal.pone.0219024
Massart, S., Chiumenti, M., De Jonghe, K., Glover, R., Haegeman, A., Koloniuk, I., Komínek, P., Kreuze, J., Kutnjak, D., Lotos, L., Maclot, F., Maliogka, V., Maree, H. J., Olivier, T., Olmos, A., Pooggin, M. M., Reynard, J.-S., Ruiz-García, A. B., Safarova, D., Schneeberger, P. H., Sela, N., Turco, S., Vainio, E. J., Varallyay, E., Verdin, E., Westenberg, M., Brostaux, Y., Candresse, T. (2019). Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies. Phytopathology, 109 (3), 488-497. DOI : 10.1094/PHYTO-02-18-0067-R
Michel, V., Julio, E., Candresse, T, Cotucheau, J., Decorps, C., Volpatti, R., Moury, B., Glais, L., Jacquot, E., Dorlhac de Borne, F., Decroocq, V., Gallois, J.-L., German-Retana, S. (2019). A complex eIF4E locus impacts the durability of va resistance to Potato virus Y in tobacco. Molecular Plant Pathology, 20 (8), 1051-1066. DOI : 10.1111/mpp.12810
Ravelonandro, M., Scorza, R., Briard, P. (2019). Innovative RNAi Strategies and Tactics to Tackle Plum Pox Virus (PPV) Genome in Prunus domestica-Plum. Plants, 8 (12). DOI : 10.3390/plants8120565
Rubio, B., Cosson, P., Caballero, M., Revers, F., Bergelson, J., Roux, F., Schurdi-Levraud, V. (2019). Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (TuMV) interactions in the field. New Phytologist, 221 (4), 2026-2038., DOI : 10.1111/nph.15507
Rubio, J., Sánchez, E., Tricon, D., Montes, C., Eyquard, J.-P., Chague, A., Aguirre, C., Prieto, H., Decroocq, V. (2019). Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production. BMC Plant Biology, 19 (1), 440. DOI : 10.1186/s12870-019-2047-9
Scussel, S., Candresse, T., Marais, A., Claverie, S., Hoareau, Azali, H. A., Verdin, E., Tepfer, M., Filloux, D., Fernandez, E., Roumagnac, P., Robène, Lefeuvre, Jourda, Roux-Cuvelier, Lett, J.-M. (2019). High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago. Archives of Virology, 164 (8), 2193-2196. DOI : 10.1007/s00705-019-04228-7
Svanella-Dumas, L., Marais, A., Depasse, F., Lefebvre, M., Brans, Y., Castaing, Latour, Bechti, A., Candresse, T. (2019). First report of Citrus virus A (CiVA) infecting pear (Pyrus communis) in France. Plant Disease, 103 (10), 2703. DOI : 10.1094/PDIS-01-19-0028-PDN
Teber, S., Ceylan, Gürcan, Candresse, T., Serçe, Ç. U., Akbulut, Kaymak, S., Akbaş (2019). Genetic diversity and molecular epidemiology of the T strain of Plum pox virus . Plant Pathology, 68, 755-763. , DOI : 10.1111/ppa.12974
Torbensen, K., Patel, Anne, A., Chovin, Demaille, C., Bataille, L., Michon, T., Grelet, E. (2019). Immuno-Based Molecular Scaffolding of Glucose Dehydrogenase and Ferrocene Mediator on fd Viral Particles Yields Enhanced Bioelectrocatalysis. ACS Catalysis, 9, 5783-5796. DOI : 10.1021/acscatal.9b01263
Von Bargen, S., Dieckmann, HL., Candresse, T., Mühlbach, H.-P., Roßbach, J., Büttner, C (2019). Determination of the complete genome sequence of European mountain ash ringspot-associated emaravirus from Sorbus intermedia reveals two additional genome segments. Archives of Virology, 164 (7), 1937-1941. DOI : 10.1007/s00705-019-04275-0
Walter, J., Barra, A., Doublet, B., Céré, N., Charon, J., Michon, T. (2019). Hydrodynamic Behavior of the Intrinsically Disordered Potyvirus Protein VPg, of the Translation Initiation Factor eIF4E and of their Binary Complex. International Journal of Molecular Sciences, 20 (7), 1794. , DOI : 10.3390/ijms20071794
Walter, J., Charon, J., Hu, Y., Lachat, J., Leger, T., Lafforgue, G., Barra, A., Michon, T. (2019). Comparative analysis of mutational robustness of the intrinsically disordered viral protein VPg and of its interactor eIF4E. Plos One, 14 (2), e0211725., DOI : 10.1371/journal.pone.0211725
Zhebentyayeva, T., Shankar, V., Scorza, R., Callahan, A., Ravelonandro, M., Castro, S., DeJong, T., Saski, CA., Dardick, C (2019). Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping. Horticulture research, 6, 12. , DOI : 10.1038/s41438-018-0090-6
2018
Anne, A., Chovin, A., Demaille, C., Michon, T. (2018). Redox-Immunofunctionalized Potyvirus Nanoparticles for High-Resolution Imaging by AFM-SECM Correlative Microscopy. In: Christina Wege, George P. Lomonossoff, Virus-Derived Nanoparticles for Advanced Technologies. Methods and Protocols (p. 455-470). Methods in Molecular Biology, 1776. New York, USA : Humana Press., DOI : 10.1007/978-1-4939-7808-3_30
Bastet, A., Lederer, B., Giovinazzo, N., Arnoux, X., German-Retana, S., Reinbold, C., Brault, V., Garcia, D., Djennane, S., Gersch, S., Lemaire, O., Robaglia, C., Gallois, JL (2018). Trans-species synthetic gene design allows resistance pyramiding and broad-spectrum engineering of virus resistance in plants. Plant biotechnology journal. , DOI : 10.1111/pbi.12896
Beuve, M., Hily, J.-M., Alliaume, A., Reinbold, C., Le Maguet, J., Candresse, T., Herrbach, E., Lemaire, O. (2018). A complex virome unveiled by deep sequencing analysis of RNAs from a French Pinot Noir grapevine exhibiting strong leafroll symptoms. Archives of Virology, Online first. , DOI : 10.1007/s00705-018-3949-9
Bortolamiol-Bécet, D., Monsion, B., Chapuis, S., Hleibieh, K., Scheidecker, D., Alioua, A., Bogaert, F., Revers, F., Brault, V., Ziegler-Graff, V. (2018). Phloem-Triggered Virus-Induced Gene Silencing Using a Recombinant Polerovirus. Frontiers in Microbiology, 9, 2449. , DOI : 10.3389/fmicb.2018.02449
Candresse, T., Theil, S., Faure, C., Marais, A. (2018). Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine. Archives of Virology, 163 (1), 277-280. , DOI : 10.1007/s00705-017-3587-7
Charon, J., Barra, A., Walter, J., Millot, P., Hébrard, E., Moury, B. (Auteur de correspondance), Michon, T. (2018). First experimental assessment of protein intrinsic disorder involvement in an RNA virus natural adaptive process. Molecular Biology and Evolution, 35 (1), 38-49. , DOI : 10.1093/molbev/msx249
Elbeaino, T., Marais, A., Faure, C., Trioano, E., Candresse, T., Parrella, G (2018). High-Throughput Sequencing Reveals Cyclamen persicum Mill. as a Natural Host for Fig Mosaic Virus. Viruses, 10 (12), 684. , DOI : 10.3390/v10120684
Filloux, D., Fernandez, E., Loire, E., Claude, L., Galzi, S., Candresse, T., Winter, S., Jeeva, M. L., Makeshkumar, T., Martin, D. P., Roumagnac, P. (2018). Nanopore-based detection and characterization of yam viruses. Scientific Reports, 8 (1), 17879. , DOI : 10.1038/s41598-018-36042-7
Gallois, J.-L., Moury, B., German-Retana, S. (Auteur de correspondance) (2018). Role of the genetic background in resistance to plant viruses. International journal of molecular sciences, 19 (10), 2856. , DOI : 10.3390/ijms19102856
Hily, J.-M., Demanèche, S., Poulicard, N., Tannières, M., Djennane, S., Beuve, M., Vigne, E., Demangeat, G., Komar, V., Gertz, C., Marmonier, A., Hemmer, C., Vigneron, S., Marais, A., Candresse, T., Simonet, P., Lemaire, O. (2018). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 16 (1), 208-220. , DOI : 10.1111/pbi.12761
Hily, J.-M., Beuve, M., Vigne, E., Demangeat, G., Candresse, T., Lemaire, O. (2018). A genome-wide diversity study of grapevine rupestris stem pitting-associated virus. Archives of Virology, Online first. , DOI : 10.1007/s00705-018-3945-0
Hily, J.-M., Candresse, T., Garcia, S., Vigne, E., Tannieres, M., Komar, V., Barnabé, G., Alliaume, A., Gilg, S., Hommay, G., Beuve, M., Marais, A., Lemaire, O. (2018). High-Throughput Sequencing and the Viromic Study of Grapevine Leaves: From the Detection of Grapevine-Infecting Viruses to the Description of a New Environmental Tymovirales Member. Frontiers in Microbiology, 9, 782, DOI : 10.3389/fmicb.2018.01782
Katsiani, A., Maliogka, Katis, Svanella-Dumas, L., Olmos, A., Ruiz-García, Marais, A., Faure, C., Theil, S., Lotos, Candresse, T. (2018). High-Throughput Sequencing Reveals Further Diversity of Little Cherry Virus 1 with Implications for Diagnostics. Viruses, 10 (7), 385. , DOI : 10.3390/v10070385
Koloniuk, I., Sarkisova, T., Petrzik, K., Lenz, O., Přibylová, J., Fránová, J., Špak, J., Lotos, L., Beta, C., Katsiani, A., Candresse, T., Maliogka, VI (2018). -Infecting Fabaviruses with the Aid of High-Throughput Sequencing. Viruses, 10 (4). , DOI : 10.3390/v10040204
Lamichhane, J. R. (Auteur de correspondance), Arseniuk, E., Boonekamp, P., Czembor, J., Decroocq, V., Enjalbert, J., Finckh, M. R., Korbin , M., Koppel , M., Kudsk, P., Mesterhazy , A., Sosnowska, D., Zimnoch-Guzowska , E., Messean, A. (2018). Advocating a need for suitable breeding approaches to boost Integrated Pest Management: A European perspective. Pest Management Science, 74 (6), 1219-1227, DOI : 10.1002/ps.4818
Marais, A., Faure, C., Bergey, B., Candresse, T (2018). Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing. Methods in molecular biology (Clifton, N.J.), 1746, 45-53. , DOI : 10.1007/978-1-4939-7683-6_4
Marais, A., Faure, C., Theil, S., Candresse, T (2018). Molecular Characterization of a Novel Species of Capillovirus from Japanese Apricot (Prunus mume). Viruses, 10 (4), 144. , DOI : 10.3390/v10040144
Marais, A., Nivault, A., Faure, C., Comont, G., Theil, S., Candresse, T., Corio-Costet, M.-F. (2018). Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Neofusicoccum luteum. Archives of Virology, 163 (2), 559–562. , DOI : 10.1007/s00705-017-3620-x
Maree, H. J., Fox, A., Al Rwahnih, M., Boonham, N., Candresse, T. (2018). Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges. Frontiers in Plant Science, 9, 1082, DOI : 10.3389/fpls.2018.01082
Massart, S., Chiumenti, M., De Jonghe, K., Glover, R., Haegeman, A., Koloniuk, I., Komínek, P., Kreuze, J., Kutnjak, D., Lotos, L., Maclot, F., Maliogka, V. I., Maree, H., Olivier, T., Olmos, A., Pooggin, M., Reynard, J.-S. S., Ruiz-García, AB., Safarova, D., Schneeberger, P. H., Sela, N., Turco, S., Vainio, E. J., Varallyai, E., Verdin, E., Westenberg, M., Brostaux, Y., Candresse, T. (2018). Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies. Phytopathology, First look. , DOI : 10.1094/PHYTO-02-18-0067-R
Michel, V., Julio, E., Candresse, T., Cotucheau, J., Decorps, C., Volpatti, R., Moury, B., Glais, L., Dorlhac de Borne, F., Decroocq, V., German-Retana, S. (2018). NtTPN1 : a RPP8 -like R gene required for Potato virus Y -induced veinal necrosis in tobacco. The Plant Journal, Online first. , DOI : 10.1111/tpj.13980
Olmos, A., Boonham, N., Candresse, T., Gentit, P., Giovani, B., Kutnjak, D., Liefting, L., Maree, H., Minafra, A., Moreira, A., Nakhla, M., Petter, Ravnikar, Rodoni, B., Roenhorst, J., Rott, M., Ruiz-García, Santala, J., Stancanelli, G., van der Vlugt, R., Varveri, C., Westenberg, Wetzel, T., Ziebell, H., Massart, S. (2018). High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities. Bulletin OEPP, Online First. , DOI : 10.1111/epp.12472
Rousseau, E., Tamisier, L., Fabre, F., Simon, V., Szadkowski, M., Bouchez, O., Zanchetta, C., Girardot, G., Mailleret, L., Grognard, F., Palloix, A., Moury, B. (2018). Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants. Molecular Plant Pathology, 19 (12), 2575-2589. , DOI : 10.1111/mpp.12730
Rumbou, A., Candresse, T., Marais, A., Theil, S., Langer, J., Jalkanen, R., Büttner, C (2018). A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease. Plos One, 13 (3), e0193888. , DOI : 10.1371/journal.pone.0193888
Šafářová, D., Candresse, T., Navrátil, M. (2018). Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Archives of Virology, 163 (2), 567-570. , DOI : 10.1007/s00705-017-3629-1
Šafářová, D., Vavroušková, K., Candresse, T., Navrátil, M (2018). Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.). Plos One, 13 (8), e0200506. , DOI : 10.1371/journal.pone.0200506
Sorrentino, R., Marais, A., Faure, C., Theil, S., Alioto, D., Candresse, T. (2018). First report of Peach-associated Luteovirus in nectarine (Prunus persica) in Italy. Plant Disease, First Look. , DOI : 10.1094/PDIS-01-18-0012-PDN
Svanella-Dumas, L., Marais, A., Faure, C., Theil, S., Lefebvre, M., Candresse, T. (2018). Genome characterization of a divergent isolate of the mycovirus Botrytis virus F from a grapevine metagenome. Archives of Virology, Online First. , DOI : 10.1007/s00705-018-3975-7
Svanella-Dumas, L., Theil, S., Barret, M., Candresse, T. (Auteur de correspondance) (2018). Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish. Archives of Virology, Online First. DOI : 10.1007/s00705-017-3693-6
Svanella-Dumas, L., Τsarmpopoulos, Ι., Marais, A., Theil, S., Faure, C., Gaudin, J., Candresse, T (2018). Complete genome sequence of lettuce chordovirus 1 isolated from cultivated lettuce in France. Archives of virology. , DOI : 10.1007/s00705-018-3858-y
Teber, S., Ceylan, Gürcan, Candresse, T., Serçe, Ç. U., Akbulut, Kaymak, S., Akbaş (2018). Genetic diversity and molecular epidemiology of the T strain of Plum pox virus . Plant Pathology. , DOI : 10.1111/ppa.12974
Verdin, E., Marais, A., Wipf-Scheibel, C., Faure, C., Pelletier, B., David, P., Svanella-Dumas, L., Poisblaud, Lecoq, H., Candresse, T. (2018). Biological and genetic characterization of new and known necroviruses causing an emerging systemic necrosis disease of corn salad (Valerianella locusta L.) in France. Phytopathology, 108,1002-1010. , DOI : 10.1094/PHYTO-08-17-0284-R
2017
Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017). Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening. BMC Plant Biology, 17 (1), 167. DOI : 10.1186/s12870-017-1116-1
Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Nectarine stem pitting-associated virus Infecting Prunus mume in Japan. Plant Disease, 101 (2), 393. DOI : 10.1094/PDIS-09-16-1323-PDN
Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Plum bark necrosis stem pitting-associated virus Infecting Flowering Cherry in Japan. Plant Disease, 101 (5), 846. DOI : 10.1094/PDIS-09-16-1324-PDN
Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First report of American plum line pattern virus infecting flowering cherry (Prunus serrulata Lindl.) in Japan. Plant Disease, First Look. DOI : 10.1094/PDIS-04-17-0494-PDN
Candresse, T., Faure, C., Theil, S., Beuve, M., Lemaire, O., Spilmont, M., Marais, A. (2017). First Report of Grapevine asteroid mosaic-associated virus Infecting Grapevine (Vitis vinifera) in France. Plant Disease, 101 (6), 1061. DOI : 10.1094/PDIS-01-17-0012-PDN
Candresse, T., Marais, A., Theil, S., Faure, C., Lacombe, T., Boursiquot, J.-M. (2017). Complete Nucleotide Sequence of an Isolate of Grapevine Satellite Virus and Evidence for the Presence of Multimeric Forms in an Infected Grapevine. Genome Announcements, 5 (16), e01703-16. DOI : 10.1128/genomeA.01703-16
Candresse, T., Faure, C., Theil, S., Spilmont, A.-S., Marais, A. (2017). First report of Grapevine hammerhead viroid-like RNA infecting grapevine (Vitis vinifera L.) in France. Plant Disease, First Look. DOI : 10.1094/PDIS-05-17-0716-PDN
Gao, R., Xu, Y., Candresse, T., He, Z., Li, S., Ma, Y., Lu, M (2017). Further insight into genetic variation and haplotype diversity of Cherry virus A from China. Plos One, 12 (10), e0186273. DOI : 10.1371/journal.pone.0186273
Grisoni, M., Marais, A., Filloux, D., Saison, A., Faure, C., Julian, C., Theil, S., Contreras, S., Teycheney, P.-Y., Roumagnac, P., Candresse, T. (2017). Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Archives of Virology, 162, 3855-3861. DOI : 10.1007/s00705-017-3540-9
Hily, JM., Demanèche, S., Poulicard, N., Tannières, M., Djennane, S., Beuve, M., Vigne, E., Demangeat, G., Komar, V., Gertz, C., Marmonier, A., Hemmer, C., Vigneron, S., Marais, A., Candresse, T., Simonet, P., Lemaire, O (2017). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal. DOI : 10.1111/pbi.12761
Jiang, J., Zhang, Z., Hu, B., Hu, G., Wang, H., Faure, C., Marais, A., Candresse, T., Li, S (2017). Identification of a viroid-like RNA in a lychee Transcriptome Shotgun Assembly. Virus Research, 240, 1-7. DOI : 10.1016/j.virusres.2017.07.012
Le Signor, C., Aime, D., Bordat, A., Belghazi, M., Labas, V., Gouzy, J., Young, N. D., Prosperi, J.-M., Leprince, O., Thompson, R., Buitink, J., Burstin, J., Gallardo-Guerrero, K. (2017). Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds. New Phytologist, 214,1597-1613. DOI : 10.1111/nph.14500
Marais, A., Nivault, A., Faure, C., Theil, S., Comont, G., Candresse, T., Corio-Costet, MF (2017). Determination of the complete genomic sequence of Neofusicoccum luteum mitovirus 1 (NLMV1), a novel mitovirus associated with a phytopathogenic Botryosphaeriaceae. Archives of Virology, 162 (8), 2477-2480. DOI : 10.1007/s00705-017-3338-9
Massart, S., Candresse, T., Gil, J., Lacomme, C., Predajna, L., Ravnikar, M., Reynard, J.S., Rumbou, A., Saldarelli, P., Škorić, D., Vainio, E.J., Valkonen, J.P.T., Vanderschuren, H., Varveri, C., Wetzel, T. (2017). A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies. Front. Microbiol. 8, 45. doi: 10.3389/fmicb.2017.00045
Nicaise, V., Candresse, T. (2017). Plum pox virus capsid protein suppresses plant pamp-triggered immunity. Molecular Plant Pathology, 18 (6), 878-886. DOI : 10.1111/mpp.12447
Patel, A. N., Anne, A., Chovin, A., Demaille, C., Grelet, E., Michon, T., Taofifenua, C. (2017). Scaffolding of Enzymes on Virus Nanoarrays: Effects of Confinement and Virus Organization on Biocatalysis. Small (Weinheim an der Bergstrasse, Germany), 1603163. DOI : 10.1002/smll.201603163
Predajňa, L., Sihelská, N., Benediková, D., Šoltys, K., Candresse, T., Glasa, M. (2017). Molecular characterization of Prune dwarf virus cherry isolates from Slovakia shows their substantial variability and reveals recombination events in PDV RNA3. European Journal of Plant Pathology, 147 (4), 877-885. DOI : 10.1007/s10658-016-1055-y
Rolland, M., Villemot, J., Marais, A., Theil, S., Faure, C., Cadot, V., Valade, R., Vitry, C., Rabenstein, F., Candresse, T. (2017). Classical and next generation sequencing approaches unravel Bymovirus diversity in barley crops in France. PloS one, 12 (11), e0188495. DOI : 10.1371/journal.pone.0188495
Rousseau, E., Moury, B., Mailleret, Senoussi, R., Palloix, A., Simon, V., Valiere, S., Grognard, Fabre, F. (2017). Estimating virus effective population size and selection without neutral markers. Plos Pathogens, 13 (11), e1006702. DOI : 10.1371/journal.ppat.1006702
Rozado-Aguirre, Z., Marais, A., Svanella-Dumas, L., Faure, C., Latour, F., Villeneuve, F., Dickinson, M., Fox, A., Boonham, N., Candresse, T. (2017). First Report of Carrot torradovirus 1 (CaTV1), a Member of the Torradovirus Genus, Infecting Carrots in France. Plant Disease, 101 (7), 1333. DOI : 10.1094/PDIS-01-17-0095-PDN
Rubio, M., Martínez-Gómez, P., Marais, A., Sánchez-Navarro, J., Pallás, V., Candresse, T. (2017). Recent advances and prospects in Prunus virology. Annals of Applied Biology, 171, 125-138. DOI : 10.1111/aab.12371
Šafářová, D., Faure, C., Candresse, T., Navrátil, M., Nečas, T., Marais, A. (2017). First Report of Little cherry virus 1 Infecting Apricot in the Czech Republic. Plant Disease, 101 (5), 845. DOI : 10.1094/PDIS-09-16-1289-PDN
Safarova, Faure, C., Marais, A., Sucha, Paprstein, Navratil, Candresse, T. (2017). First report of Prunus virus F infecting sour cherry in the Czech Republic. Plant Disease. DOI : 10.1094/PDIS-04-17-0469-PDN
Sánchez, E., Tricon, D., Mora, Quiroz, Decroocq, V., Prieto (2017). A fast and efficient protocol for small RNA extraction in Japanese plum and other Prunus species. Electronic Journal of Biotechnology, 30, 103-109. DOI : 10.1016/j.ejbt.2017.10.006
Sofer, L., Cabanillas, DG., Gayral, M., Téplier, R., Pouzoulet, J., Ducousso, M., Dufin, L., Bréhélin, C., Ziegler-Graff, V., Brault, V., Revers, F (2017). Identification of host factors potentially involved in RTM-mediated resistance during potyvirus long distance movement. Archives of virology, 162, 1855-1865. DOI : 10.1007/s00705-017-3292-6
Sorrentino, R., Marais, A., Faure, C., Theil, S., Alioto, Candresse, T. (2017). First report of Kalanchoe mosaic virus and Kalanchoe latent virus infecting Ghost plant (Graptopetalum paraguayense W.) in Italy. Plant Disease, 101 (8), 1560. DOI : 10.1094/PDIS-03-17-0338-PDN
Tavert-Roudet, G., Anne, A., Barra, A., Chovin, A., Demaille, C., Michon, T. (2017). The potyvirus particle recruits the plant translation initiation factor eIF4E by means of the VPg covalently linked to the viral RNA. Molecular Plant-Microbe Interactions, 30 (9), 754-762. DOI : 10.1094/MPMI-04-17-0091-R
Więsyk, A., Candresse, T., Zagórski-Ostoja, W., Góra-Sochacka, A (2017). Viability and genetic stability of potato spindle tuber viroid mutants with indels in specific loops of the rod-like secondary structure. Virus Research, 240, 94-100. DOI : 10.1016/j.virusres.2017.07.024
2016
Bernardo, P., Muhire, B., François, S., Deshoux, M., Hartnady, P., Farkas, K., Kraberger, S., Filloux, D., Fernandez, E., Galzi, S., Ferdinand, R., Granier, M., Marais, A., Monge Blasco, P., Candresse, T., Escriu, F., Varsani, A., Harkins, G. W., Martin, D. P., Roumagnac, P. (2016). . Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Virology, 493, 142-153. DOI : 10.1016/j.virol.2016.03.016
Besong-Ndika, J., Wahlsten, M., Cardinale, D., Pille, J., Walter, J., Michon, T., Mäkinen, K. (2016). . Toward the Reconstitution of a Two-Enzyme Cascade for Resveratrol Synthesis on Potyvirus Particles. Frontiers in plant science, 7, 89. DOI : 10.3389/fpls.2016.00089
Candresse, T., Marais, A., Sorrentino, R., Faure, C., Theil, S., Cadot, V., Rolland, M., Villemot, J., Rabenstein, F. (2016). . Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing.. Archives of virology, 161 (3), 741-743. DOI : 10.1007/s00705-015-2709-3
Charon, J., Theil, S., Nicaise, V., Michon, T. (2016). . Protein intrinsic disorder within the Potyvirus genus: from proteome-wide analysis to functional annotation. Molecular BioSystems, 12, 634-652. DOI : 10.1039/c5mb00677e
Cirilli, M., Geuna, F., Babini , A.-R., Bozhkova, V., Catalano, L., Cavagna, B., Dallot, S., Decroocq, V., Dondini, L., Foschi, S., Ilardi, V., Liverani, A., Mezzetti, B., Minafra, A., Pancaldi, M., Pandolfini, T., Pascal, T., Savino, V. N., Scorza, R., Verde, I., Bassi, D. (2016). Fighting sharka in peach: current limitations and future perspectives. Frontiers in Plant Science, 7, 1290. DOI : 10.3389/fpls.2016.01290
Decroocq, S., Cornille, A., Tricon, D., Babayeva, S., Chague, A., Eyquard, JP., Karychev, R., Dolgikh, S., Kostritsyna, T., Liu, S., Liu, W., Geng, W., Liao, K., Asma, BM., Akparov, Z., Giraud, T., Decroocq, V (2016). New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance. Molecular ecology, 25 (19), 4712-29. DOI : 10.1111/mec.13772
Duff-Farrier, C. R. A., Candresse, T., Bailey, A. M., Boonham, N., Foster, G. D. (2016). . Evidence for different, host-dependent functioning of Rx against both wild-type and recombinant Pepino mosaic virus. Molecular plant pathology, 17 (1), 120-126. DOI : 10.1111/mpp.12256
Hadidi, A., Flores, R., Candresse, T., Barba, M. (2016). Next-Generation Sequencing and Genome Editing in Plant Virology. Frontiers in Microbiology, 7, 1325. DOI : 10.3389/fmicb.2016.01325
Lebaron, C., Rosado, A., Sauvage, C., Gauffier, C., German-Retana, S., Moury, B., Gallois, JL (2016). A new eIF4E1 allele characterized by RNAseq data mining is associated with resistance to PVY in tomato albeit with a low durability. The Journal of General Virology, 97, 3063-3072. DOI : 10.1099/jgv.0.000609
Marais, A., Faure, C., Candresse, T. (2016). New Insights into Asian Prunus Viruses in the Light of NGS-Based Full Genome Sequencing. PloS one, 11 (1), e0146420. DOI : 10.1371/journal.pone.0146420
Marais, A., Faure, C., Theil, S., Svanella-Dumas, L., Brans, Y., Maurice, I., Blin, V., Candresse, T. (2016). First Report of Little cherry virus 1 on Plum in France. Plant Disease, 100 (12), 2544. DOI : 10.1094/PDIS-06-16-0915-PDN
Mariette, S., Wong Jun Tai, F., Roch, G., Barre, A., Chague, A., Decroocq, S., Groppi, A., Laizet, Y., Lambert, P., Tricon, D., Nikolski, M., Audergon, J.-M., Abbott, A. G., Decroocq, V. (2016). . Genome-wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca). New Phytologist, 209 (2), 773-784. DOI : 10.1111/nph.13627
Miguel, S., Biteau, F., Mignard, B., Marais, A., Candresse, T., Theil, S., Bourgaud, F., Hehn, A. (2016). Beet western yellows virus infects the carnivorous plant Nepenthes mirabilis. Archives of virology, 161, 2273-2278. DOI : 10.1007/s00705-016-2891-y
2015
Besong-Ndika, J., Ivanov, K. I., Hafrèn, A., Michon, T., Mäkinen, K. (2015). Cotranslational coat protein-mediated inhibition of potyviral RNA translation. Journal of virology, 89 (8), 4237-48. DOI : 10.1128/JVI.02915-14
Beuve, M., Candresse, T., Tannieres, M., Lemaire, O. (2015). First Report of Grapevine Pinot gris virus (GPGV) in grapevine in France. Plant Disease, 99 (2), 293. DOI : 10.1094/PDIS-10-14-1008-PDN
Bordat, A., Houvenaghel, M.-C., German-Retana, S. (2015). Gibson assembly : an easy way to clone potyviral full-length infectious cDNA clones ex pressing an ectopic VPg. Virology Journal, 12, 89. DOI : 10.1186/s12985-015-0315-3
Cayla, T., Batailler, B., LE HIR, R., Revers, F., Anstead, J. A., Thompson, G. A., Grandjean, O., Dinant, S. (2015). Live imaging of companion cells and sieve elements in Arabidopsis leaves. PloS one, 10 (2), e0118122. DOI : 10.1371/journal.pone.0118122
Julio, E., Cotucheau, J., Decorps, C., Volpatti, R., Sentenac, C., Candresse, T., Dorlhac de Borne, F. (2015). A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Molecular Biology Reporter, 33 (3), 609-623. DOI : 10.1007/s11105-014-0775-4
Maliogka, VI., Olmos, A., Pappi, PG., Lotos, L., Efthimiou, K., Grammatikaki, G., Candresse, T., Katis, NI., Avgelis, AD (2015). A novel grapevine badnavirus is associated with the Roditis leaf discoloration disease. Virus research, 203, 47-55. DOI : 10.1016/j.virusres.2015.03.003
Marais, A., Faure, C., Mustafayev, E., Barone, M., Alioto, D., Candresse, T. (2015). Characterization by Deep Sequencing of Prunus virus T, a Novel Tepovirus Infecting Prunus Species. Phytopathology, 105 (1), 135-140. DOI : 10.1094/PHYTO-04-14-0125-R
Minutillo, SA., Marais, A., Mascia, T., Faure, C., Svanella-Dumas, L., Theil, S., Payet, A., Perennec, S., Schoen, L., Gallitelli, D., Candresse, T. (2015). Complete nucleotide sequence of Artichoke latent virus shows it to be a member of the genus Macluravirus in the family Potyviridae. Phytopathology, 105 (8), 1155-60. DOI : 10.1094/PHYTO-01-15-0010-R
Nault, L., Taofifenua, C., Anne, A., Chovin, A., Demaille, C., Besong-Ndika, J., Cardinale, D., Carette, N., Michon, T. and , Walter, J. (2015). Electrochemical Atomic Force Microscopy Imaging of Redox-Immunomarked Proteins on Native Potyviruses: From Subparticle to Single-Protein Resolution. ACS Nano, 9 (5) : 4911-4924. doi:10.1021/acsnano.5b00952
Nicaise, V. (2015) . Lost in Translation: An Antiviral Plant Defense Mechanism Revealed. Cell Host & Microbe, 17 (4), 417-419. DOI : 10.1016/j.chom.2015.03.009
Poque, A., Pagny, G., Ouibrahim, L., Chague, A., Eyquard, J.-P., Caballero, M., Candresse, T., Caranta, C., Mariette, S., Decroocq, V. (2015). . Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana. BMC Plant Biology, 15 (159), 1-14. DOI : 10.1186/s12870-015-0559-5
Rubio, M., Rodríguez-Moreno, L., Ballester, A. R., Castro de Moura, M., Bonghi, C., Candresse, T., Martínez-Gómez, P. (2015). Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq. Molecular plant pathology, 16 (2), 164-176. DOI : 10.1111/mpp.12169
Soueidan, H., Schmitt, L.-A., Candresse, T., Nikolski, M. (2015). Finding and identifying the viral needle in the metagenomic haystack: trends and challenges. Frontiers in microbiology, 5, 1-7. DOI : 10.3389/fmicb.2014.00739
2014
Candresse, T.; Filloux, D.; Muhire, B.; Jullian, C.; Galzi, S.; Fort, G.; Bernardo, P.; Daugrois, J.-H.; Fernandez, E.; Martin, D. P.; Varsani, A.; Roumagnac, P. Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context. PloS one, 2014, 9 (7). DOI : 10.1371/journal.pone.0102945
Choulet, F.; Alberti, A.; Theil, S.; Glover, N. M.; Barbe, V.; Daron, J.; Pingault, L.; Sourdille, P.; Couloux, A.; Paux, E.; Leroy, P.; Mangenot, S.; Guilhot, N.; Le Gouis, J.; Balfourier, F.; Alaux, M.; Jamilloux, V.; Julie, P.; Durand, C.; Bellec, A.; Gaspin, C.; Šafář, J.; Doležel, J.; Rogers, J.; Vandepoele, K.; Aury, J.-M.; Mayer, K.; Berges, H.; Quesneville, H.; Wincker, P.; Feuillet, C. Structural and Functional Partitioning of Bread Wheat Chromosome 3B. Sciences, 2014, 345 (6194 ). DOI : 10.1126/science.1249721
Cosson, P.; Decroocq, V.; Revers, F. Development and characterization of 96 microsatellite markers suitable for QTL mapping and accession control in an Arabidopsis core collection. Plant methods, 2014, 10 (1), 2 : 1-6. DOI : 10.1186/1746-4811-10-2
Decroocq, S.; Chague, A.; Lambert, P.; Roch, G.; Audergon, J. M.; Geuna, F.; Chiozzotto, R.; Bassi, D.; Dondini, L.; Tartarini, S.; Salava, J.; Krska, B.; Palmisano, F.; Karayiannis, I.; Decroocq, V. Selecting with markers linked to the PPVres major QTL is not sufficient to predict resistance to Plum Pox Virus (PPV) in apricot. Tree Genetics and Genomes, 2014, 10 (5), 1161-1170. DOI : 10.1007/s11295-014-0750-0
García, J. A.; Glasa, M.; Cambra, M.; Candresse, T. Plum Pox Virus and Sharka: A Model Potyvirus and a Major Disease. Molecular plant pathology, 2014, 15 (3), 226-241. DOI : 10.1111/mpp.12083
Glasa, M.; Predajňa, L.; Komínek, P.; Nagyová, A.; Candresse, T.; Olmos, A. Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines. Archives of Virology, 2014, 159 (8), 2103-2107. DOI : 10.1007/s00705-014-2031-5
Julio, E.; Cotucheau, J.; Decorps, C.; Volpatti, R.; Sentenac, C.; Candresse, T.; Dorlhac de Borne, F. A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Molecular Biology Reporter, 2014, Online first. DOI : 10.1007/s11105-014-0775-4
Katsiani, A.T.; Maliogka, V.I.; Candresse, T.; Katis, N.I. Host range studies, genetic diversity and evolutionary relationships of ACLSV isolates from ornamental, wild and cultivated rosaceous species. Plant Pathology, 2014, 63 (1), 63-71. DOI: 10.1111/ppa.12058
Mambole, I. A.; Bonheur, L.; Svanella-Dumas, L.; Filloux, D.; Gomez, R.-M.; Faure, C.; Lange, D.; Anzala, F.; Pavis, C.; Marais, A.; Roumagnac, P.; Candresse, T.; Teycheney, P.-Y. Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams. Archives of Virology, 2014, Online first. DOI : 10.1007/s00705-014-2211-3
Marais, A.; Faure, C.; Couture, C.; Bergey, B.; Gentit, P.; Candresse, T. Characterization by deep sequencing of divergent Plum bark necrosis stem pitting-associated virus isolates and development of a broad spectrum PBNSPaV detection assay. Phytopathology, 2014, 104 (6), 660-666. DOI : 10.1094/PHYTO-08-13-0229-R
Massart, S.; Olmos, A.; Jijakli, H.; Candresse, T. Current impact and future directions of high throughput sequencing in plant virus diagnostics. Virus research, 2014, 188, 90-96. DOI : 10.1016/j.virusres.2014.03.029
Nicaise, V. Crop immunity against viruses: outcomes and future challenges. Frontiers in plant science, 2014, 5, 660 : 1-18. DOI : 10.3389/fpls.2014.00660
Ouibrahim, L.; Mazier, M.; Estevan, J.; Pagny, G.; Decroocq, V.; Desbiez, C.; Moretti, A.; Gallois, J.-L.; Caranta, C. Cloning of the Arabidopsis rwm1 gene for resistance to Watermelon mosaic virus points to a new function for natural virus resistance genes. Plant Journal, 2014, 79 (5), 705-716. DOI : 10.1111/tpj.12586
Perraki, A.; Binaghi, M.; Mecchia, M. A.; Gronnier, J.; German-Retana, S.; Mongrand, S.; Bayer, E.; Zelada, A. M.; Germain, V. StRemorin1.3 hampers Potato virus X TGBp1 ability to increase plasmodesmata permeability, but does not interfere with its silencing suppressor activity. FEBS Letters, 2014, 588 (9), 1699 - 1705. DOI : 10.1016/j.febslet.2014.03.014
Ravelonandro, M.; Scorza, R.; Hily, J.-M.; Briard, P. The efficiency of RNA interference for conferring stable resistance to plum pox virus. Plant Cell Tissue and Organ Culture, 2014, 118 (2), 347-356. DOI : 10.1007/s11240-014-0487-3
Rodamilans, B.; San León, D.; Mühlberger, L.; Candresse, T.; Neumüller, M.; Oliveros, J. C.; García, J. A. Transcriptomic Analysis of Prunus domestica Undergoing Hypersensitive Response to Plum Pox Virus Infection. PloS one, 9 (6), e100477. DOI : 10.1371/journal.pone.0100477
Sorel, M.; Garcia, J. A.; German-Retana, S. The Potyviridae Cylindrical Inclusion helicase: a key multipartner and multifunctional protein. Molecular plant-microbe interactions : MPMI, 2014, 27 (3), 215-216. DOI : 10.1094/MPMI-11-13-0333-CR
Sorel, M.; Svanella-Dumas, L.; Candresse, T.; Acelin, G.; Pitarch, A.; Houvenaghel, M.-C.; German-Retana, S. Key Mutations in the Cylindrical Inclusion Involved in Lettuce mosaic virus Adaptation to eIF4E-Mediated Resistance in Lettuce. Molecular Plant-Microbe Interactions : MPMI, 2014, 27 (9), 1014-24. DOI : 10.1094/MPMI-04-14-0111-R
Svanella-Dumas, L.; Verdin, E.; Faure, C.; German-Retana, S.; Gognalons, P.; Danet, J.-L.; Marais, A.; Candresse, T. Adaptation of Lettuce mosaic virus to Catharanthus roseus involves mutations in the central domain of the VPg. Molecular plant-microbe interactions : MPMI, 2014, 27 (5), 491-497. DOI : 10.1094/MPMI-10-13-0320-R
Vayssier-Taussat, M.; Albina, E.; Citti, C.; Cosson, J.-F.; Jacques, M. A.; Lebrun, M.-H.; Le Loir, Y.; Ogliastro, M. H.; Petit, M. A.; Roumagnac, P.; Candresse, T. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Frontiers in Cellular and Infection Microbiology, 2014, 4, article 29. DOI : 10.3389/fcimb.2014.00029
Zhang, S.; Ravelonandro, M.; Russell, P.; McOwen, N.; Briard, P.; Bohannon, S.; Vrient, A. Rapid diagnostic detection of plum pox virus in Prunus plants by isothermal AmplifyRP(®) using reverse transcription-recombinase polymerase amplification. Journal of Virological Methods, 2014, 207, 114-120. DOI : 10.1016/j.jviromet.2014.06.026
2013
Arous, S.; Marais, A.; Faure, C.; Svanella-Dumas, L.; Candresse, T. Partial sequence of a new Partitivirus-infecting Podosphaera tridactyla, the Prunus powdery mildew agent. Virus Genes, 2013, 46(1) : 199-200. DOI:10.1007/s11262-012-0840-8
Candresse, T.; Marais, A.; Faure, C. First report of Southern tomato virus on tomatoes in Southwest France. Plant Disease, 2013, 97 (8), 1124. DOI : 10.1094/PDIS-01-13-0017-PDN
Candresse, T.; Marais, A.; Faure, C.; Gentit, P. Association of Little cherry virus 1 (LChV1) with the Shirofugen stunt disease and characterization of the genome of a divergent LChV1 isolate. Phytopathology, 2013, 103(3) : 293-8. DOI:10.1094/PHYTO-10-12-0275-R
Glasa, M.; Prikhodko, Y.; Predajňa, L.; Nagyová, A.; Shneyder, Y.; Zhivaeva, T.; Šubr, Z.; Cambra, M.; Candresse, T. Characterization of sour cherry isolates of Plum pox virus from the Volga basin in Russia reveals a new cherry strain of the virus. Phytopathology, 2013, 103 (9), 972-9. DOI : 10.1094/PHYTO-11-12-0285-R
Hipper, C.; Brault, V.; Ziegler-Graff, V.; Revers, F. Viral and cellular factors involved in phloem transport of plant viruses. Frontiers in Plant Science, 2013, 4 : 1-24. DOI:10.3389/fpls.2013.00154
Marais, A.; Faure, C.; Couture, C.; Bergey, B.; Gentit, P.; Candresse, T. Characterization by deep sequencing of divergent Plum bark necrosis stem pitting-associated virus isolates and development of a broad spectrum PBNSPaV detection assay. Phytopathology, 2013. DOI : 10.1094/PHYTO-08-13-0229-R
Mustafayev, E.; Svanella-Dumas, L.; Kumari, S.; Akparov, Z.; Candresse, T. First report of Barley yellow dwarf virus and Cereal yellow dwarf virus affecting cereal crops in Azerbaijan. Plant Disease, 2013, 97 (6) : 849. DOI:10.1094/PDIS-07-12-0656-PDN
Pille, J.; Cardinale, D.; Carette, N.; Di Primo, C.; Besong-Ndika, J.; Walter, J.; Lecoq, H.; van Eldijk, M. B.; Smits, F. C. M.; Schoffelen, S.; van Hest, J. C. M.; Mäkinen, K.; Michon, T. General strategy for ordered noncovalent protein assembly on well-defined nanoscaffolds. Biomacromolecules, 2013, 14 (12), 4351-9. DOI : 10.1021/bm401291u
Ravelonandro, M.; Scorza, R.; Polak, J.; Callahan, A.; Krska, B.; Kundu, J.; Briard, P. "HoneySweet" Plum—A Valuable Genetically Engineered Fruit-Tree Cultivar. Food and Nutrition Sciences, 2013, 4, 45-49. DOI : 10.4236/fns.2013.46A005
Safarova, D.; Navratil, M.; Paprstein, T.; Candresse, T.; Marais, A. Cherry virus A infecting cherries and plums in the Czech Republic – Short communication . Horticultural Science, 2013, 40(1) : 37-39.
Svanella-Dumas, L.; Candresse, T.; Hullé, M.; Marais, A. Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic Kerguelen Islands and characterization of two new Luteovirus species. Plos One, 2013, 8 (6), e67231, 1-13. DOI : 10.1371/journal.pone.0067231
2012
Arunyawat, U.; Capdeville, G.; Decroocq, V.; Mariette, S. Linkage disequilibrium in French wild cherry germplasm and worldwide sweet cherry germplasm. Tree Genetics and Genomes. 2012, 8 : 737-755. DOI: 10.1007/s11295-011-0460-9
Cosson, P.; Schurdi-Levraud, V.; Le, QH.; Sicard, O.; Caballero, M.; Roux, F.; Le Gall, O.; Candresse, T.; Revers, F. The RTM Resistance to Potyviruses in Arabidopsis thaliana: Natural Variation of the RTM Genes and Evidence for the Implication of Additional Genes. PLoS ONE. 2012, 7(6) : e39169. DOI: 10.1371/journal.pone.0039169
Marais, A.; Svanella-Dumas, L.; Barone, M.; Gentit, P.; Faure, C.; Charlot, G.; Ragozzino, A.; Candresse, T. Development of a polyvalent RT-PCR detection assay covering the genetic diversity of Cherry capillovirus A. Plant Pathology. 2012, 61 (1) : 195-204.
Mathioudakis, M.M. ; Candresse, T. ; Barone, M. ; Ragozzino, A. ; Katis, N.I. Cydonia japonica, Pyrus calleryana and P. amygdaliformis: three new ornamental or wild hosts of Apple stem pitting virus.Virus Genes. 2012, 44 (2) : 319-322.
Pagny, G.; Paulstephenraj, P. S.; Poque, S.; Sicard, O.; Cosson, P.; Eyquard, J.-P.; Caballero, M.; Chague, A.; Gourdon, G.; Negrel, L.; Candresse, T.; Mariette, S.; Decroocq, V. Family-based linkage and association mapping reveals novel genes affecting Plum pox virusinfection in Arabidopsis thaliana. New Phytologist. 2012, 196 : 873–886. DOI:10.1111/j.1469-8137.2012.04289.x
Perraki, A.; Cacas, J. L.; Crowet, J. M.; Lins, L.; Castroviejo, M.; German-Retana, S.; Mongrand, S.; Raffaele, S. Plasma membrane localization of solanum tuberosum remorin from group 1, homolog 3 is mediated by conformational changes in a novel C-terminal anchor and required for the restriction of potato virus X movement]. Plant Physiol. 2012, 160 : 624-37. DOI: 10.1104/pp.112.200519
Predajňa, L.; Šubr, Z.; Candresse, T.; Glasa, M. Evaluation of the genetic diversity of Plum pox virus in a single plum tree. Virus research. 2012, 167 (1), 112-7. DOI : 10.1016/j.virusres.2012.04.002
Safarova, D.; Navratil, M.; Faure, C.; Candresse, T.; Marais, A. First Report of Apricot pseudo-chlorotic leaf spot virus Infecting Plum (Prunus domestica) in the Czech Republic. Plant Disease. 2012, 96 (3) : 461. DOI: 10.1094/PDIS-10-11-0844
Sturbois, B.; Dubrana-Ourabah, M.P.; Gombert, J.; lasseur, B.; Macquet, A.; Faure, C.; Bendahmane, A.; Baures, I.; Candresse, T. Identification and characterization of tomato mutants affected in the Rx-mediated resistance to PVX isolates. Molecular Plant Microbe Interactions. 2012, 25 (3) : 341-354. DOI: 10.1094/MPMI-07-11-0181
Tavert-Roudet, G.; Abdul Razzak, A.; Doublet, B.; Walter, J.; Delaunay, T.; Michon, T.; Le Gall, O.; Candresse, T. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. Journal of General Virology. 2012, 93 (1) : 184-193. DOI: 10.1099/vir.0.035881-0
Books or book chapters
Ravelonandro, M., Briard, P. (2020). Mechanisms of natural and genetically engineered resistance against viruses. In L. P. Awasthi (Ed.), Applied Plant Virology : Advances, Detection, and Antiviral Strategies provides an overview on recent developments and applications in the field of plant virology (pp. 697-704). Elsevier. DOI : 10.1016/b978-0-12-818654-1.00049-9
Glasa, M. and T. Candresse (2020). Plum Pox Virus (Potyviridae). Encyclopedia of Virology, Elsevier.
Anne, A., A. Chovin, C. Demaille and T. Michon (2018). Redox-Immunofunctionalized Potyvirus Nanoparticles for High-Resolution Imaging by AFM-SECM Correlative Microscopy. Virus-Derived Nanoparticles for Advanced Technologies. W. Christina and P. L. George, Humana Press. 1776: 455-470.
Marais, A., C. Faure, B. Bergey and T. Candresse (2018). Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing. Viral Metagenomics: Methods and Protocols, Springer Science + Business Media LLC. 1746: 45-53.
Candresse, T., J. T. J. Verhoeven, G. Stancanelli, R. W. Hammond and S. Winter (2017). Other Pospiviroids Infecting Solanaceous Plants. Viroids and Satellites, Elsevier, Academic Press: 159-168. DOI : 10.1016/B978-0-12-801498-1.00015-2
Delano, J., M. Cieslinska, V. Pallas, R. Flores, T. Candresse and W. Jelkmann (2017). Viruses, Viroids, Phytoplasmas and Genetic Disorders of Cherry. Cherries: Botany, Production and Uses, CABI: 386-419.
Moury, B., V. Simon, C. Faure, L. Svanella-Dumas, A. Marais and T. Candresse (2017). Host groups of Potato virus Y: vanishing barriers. Potato virus Y: biodiversity, pathogenicity, epidemiology and management, Springer International Publishing AG: 243-261.
Besong-Ndika, J., J. Walter and K. Mäkinen (2016). Virus diversity to explore various kinds of enzyme nanocarriers. Enzyme nanocarriers. C. Daniela and M. Thierry, Pan Stanford Publishing: 1-43.
Cardinale, D., N. Carette and T. Michon (2016). Strategies for Virus-Enzyme coupling. Enzyme nanocarriers. C. Daniela and M. Thierry, Pan Stanford Publishing: 45-104.
Cardinale, D. and T. Michon (2016). Enzyme nanocarriers, Pan Stanford Publishing.
Revers, F. and J. A. García (2015). Molecular biology of potyviruses. Advances in Virus Research, Academic Press - Elsevier. 92: 101-199. DOI : 10.1016/bs.aivir.2014.11.006
Revers, F. and V. Nicaise (2014). Plant resistance to infection by viruses. Encyclopedia of Life Sciences, John Wiley and Sons Ltd. DOI : 10.1002/9780470015902.a0000757.pub3
Rossi, V., T. Candresse, M. J. Jeger, C. Manceau, G. Urek and G. Stancanelli (2014). Diagnosis of plant pathogens and implications for plant health regulation: the European Food Safety Authority perspective. Detection and diagnostics of plant pathogens, Springer.
Scorza, R., M. Ravelonandro and M. Braverman (2013). Development and regulation of the Plum Pox Virus resistant transgenic plum "Honeysweet". Regulations of agricultural biotechnology : the United States and Canada, Springer: 269-280.
Adams, M. J., T. Candresse, J. Hammond, J. F. Kreuze, G. P. Martelli, S. Namba, M. N. Pearson, K. H. Ryu, P. Saldarelli and N. Yoshikawa (2012). Betaflexiviridae. Virus Taxonomy. M. Q. K. Andrew, L. Elliot, J. A. Michael and B. C. Eric, Elsevier: 920-941.
Adams, M. J., T. Candresse, J. Hammond, J. F. Kreuze, G. P. Martelli, S. Namba, M. N. Pearson, K. H. Ryu and A. M. Vaira (2012). Alphaflexiviridae. Virus Taxonomy. M. Q. K. Andrew, L. Elliot, J. A. Michael and B. C. Eric, Elsevier: 904-919.
Chroboczek, J., E. Hébrard, K. Mäkinen, T. Michon and K. Rantalainen (2012). Intrinsic disorder in genome-linked viral proteins VPgs of potyviruses. Flexible viruses : structural disorder in viral proteins. U. Vladimir and L. Sonia, John Wiley: 277-311.
Martelli, G. P., A. A. Agranovsky, M. Bar-Joseph, D. Boscia, T. Candresse, R. H. A. Coutts, V. V. Dolja, J. S. Hu, W. Jelkmann, A. V. Karasev, R. R. Martin, A. Minafra, S. Namba and H. J. Vetten (2012). Closteroviridae. Virus Taxonomy. M. Q. K. Andrew, L. Elliot, J. A. Michael and B. C. Eric, Elsevier: 987-1001.
PhD Theses
Liu, S. (2019). Histoire évolutive et impact des différents processus évolutifs sur la diversité génétique de l’abricotier (Prunus armeniaca L.), Université de Bordeaux.
Ma, Y. (2019). Wild plant species associated viromes : towards improved characterization strategies and variability in various ecological environments, Université de Bordeaux.
Charon, J. (2015). Contribution du désordre intrinsèque des protéines aux fonctions impliquées dans le cycle viral et l'évolution adaptative des virus à ARN. Etude appliquée au genre Potyvirus, Université de Bordeaux.
Revers, F. (2015). Vers la construction d’indicateurs de biodiversité : recensement de l’avifaune des dunes d’Aquitaine, Université de Bordeaux.
Sorel, M. (2013). La protéine d’inclusion cylindrique (CI) : un facteur viral clé dans l’adaptation du LMV à la résistance conférée par eIF4E chez la laitue, Université de Bordeaux Ségalen (Bordeaux 2).
Poque, S. (2012). Identification de nouveaux mécanismes de résistance au Plum Pox Virus chez Arabidopsis thaliana, Université de Bordeaux Ségalen (Bordeaux 2).
